PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0074s0018.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25802.5 Da    PI: 6.8709
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0074s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.31.3e-101151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i n s r+ t+ kRr+ ++ K  E+S+L++ e++ i++s++
  Kaladp0074s0018.1.p 11 IPNASSRKATLRKRRECLMRKVMEISTLTGEEACGIVLSPE 51
                         7899**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-12161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.358149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-17293IPR002100Transcription factor, MADS-box
CDDcd002668.22E-22283No hitNo description
PRINTSPR004049.4E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-91151IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTRRKVHLAW IPNASSRKAT LRKRRECLMR KVMEISTLTG EEACGIVLSP EEGDPPVFWP  60
PSINGVLDRF FSLPEADQCK KMTTLDIFMQ EKISKMEEQV EKERRKARDQ EINYVMHSIY  120
SHGKPIDSLT SGETHQLFWF MEELKKKCEL RILHLNQENS PPDSLMVPPQ PPMMQSSVFP  180
AKCPGQPQPE HSNSSDGDTK NMAGNILGIN TNAEHKINDD PTNVATS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVHLAWIPNASSRKATLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-23AGAMOUS-like 80