PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0072s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 518aa MW: 55301 Da PI: 6.7671 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kaladp0072s0051.1.p 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.0007 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Kaladp0072s0051.1.p 142 WKCEKCSKKYAVQSDWKAHSKVC 164 58*****************9877 PP | |||||||
3 | zf-C2H2 | 11.7 | 0.00077 | 172 | 190 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Kaladp0072s0051.1.p 172 DCGTTFSRRDSFITHRAFC 190 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.89E-6 | 65 | 88 | No hit | No description |
SMART | SM00355 | 0.036 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 98 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-4 | 130 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.89E-6 | 137 | 162 | No hit | No description |
SMART | SM00355 | 140 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MPDDASPMAA ASCEEASVSS SGTQAAQPPP PPSSGVKKRR SLPGMPDPDA EVVALSPKTL 60 MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVRKKVYVCP EAGCVHHDPT 120 RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH SKVCGTKEYK CDCGTTFSRR 180 DSFITHRAFC DVLTDERIRV ARTQIPDKNV ADNSNPDEEV EPEVEIPAVA PPSSPSAAPA 240 LNSSANLTGS VLPIQDSDLI WKESETPEEL EDAQPPAATC VTESCSNSMN SNSHGNASTG 300 IYGSLFAPLS TSASVPNETP GFANFVWDVA TPDGITKLAP SMPTEPISLC LSTNHSSAIF 360 RQTVEEPQSY LQQPVMSATA LLQKAAQMGS SSSGSSLLRG LGVVTSLPSR SIQREVLGWN 420 GMHIRSENTS FHASPRLGPE YDASSRFNDF MMGTSSIFEP KPTTLDFLGL GMSAGGGSTG 480 GLSALLTSIE GGLDVSAAAA SYGGSGEYPC KDIGRNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-33 | 138 | 201 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 4e-33 | 138 | 201 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 104 | KLRQRTSKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079066.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-158 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A067K9Z7 | 0.0 | A0A067K9Z7_JATCU; Uncharacterized protein | ||||
STRING | VIT_04s0023g01430.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-120 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0072s0051.1.p |
Publications ? help Back to Top | |||
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