PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0271.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 213aa    MW: 23736.9 Da    PI: 10.7425
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0271.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-20665357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eq+ +Leel+++  r+p+a+++++++ +l    +++ ++V++WFqN++a+e++
  Kaladp0071s0271.1.p  6 SRWCPTPEQVMILEELYKSgIRTPNAAQIQQITCHLsyhgKIEGKNVFYWFQNHKARERQ 65
                         8*****************99**************************************97 PP
2Wus_type_Homeobox120.47.6e-39466264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +++RW+PtpeQ++iLeelyksG+rtPn+++iq+it +L+ +Gkie+kNVfyWFQN+kaRerqk
  Kaladp0071s0271.1.p  4 SSSRWCPTPEQVMILEELYKSGIRTPNAAQIQQITCHLSYHGKIEGKNVFYWFQNHKARERQK 66
                         689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.977166IPR001356Homeobox domain
SMARTSM003892.5E-5370IPR001356Homeobox domain
SuperFamilySSF466892.22E-11469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-7665IPR009057Homeodomain-like
PfamPF000467.6E-18665IPR001356Homeobox domain
CDDcd000865.71E-4766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSSSSSRWCP TPEQVMILEE LYKSGIRTPN AAQIQQITCH LSYHGKIEGK NVFYWFQNHK  60
ARERQKLKRN KLGKQYCQAS PQMQLPSSSA SLQRSSATAS FGLHQAPFCT CTPSSSVGFL  120
KQEGEPARNN QMPKRRMNNH RRRSCGDGAG GKSMIRACDQ SWKQAKVNNA GSTHPTLCSS  180
NLQPLRTLQL FPVKATNLRQ ESGSFANNQF LT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-37WOX family protein