PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0071s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 170aa MW: 18905 Da PI: 9.6891 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.4e-17 | 10 | 71 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+++t eq+ Leel++ +p+a+++ ++ ++l +++ ++V++WFqN++a++k+ Kaladp0071s0250.1.p 10 RAARWCPTGEQVMLLEELYKGgLTNPTAAQIHQIVAHLsrfgKVQGKNVFYWFQNHKARDKQ 71 568*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 105.4 | 3.8e-34 | 11 | 72 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt eQ+++Leelyk Gl +P++++i++i a+L+++Gk+++kNVfyWFQN+kaR++q+ Kaladp0071s0250.1.p 11 AARWCPTGEQVMLLEELYKGGLTNPTAAQIHQIVAHLSRFGKVQGKNVFYWFQNHKARDKQR 72 68**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.637 | 7 | 72 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-11 | 8 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.3E-4 | 9 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.0017 | 10 | 70 | No hit | No description |
Pfam | PF00046 | 5.6E-15 | 10 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-6 | 13 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MCPAVGNAAR AARWCPTGEQ VMLLEELYKG GLTNPTAAQI HQIVAHLSRF GKVQGKNVFY 60 WFQNHKARDK QRIRRKLIWR EKQQMVELRM NRCWGVINKA MPQPRCDAGD HVPSLVTLDL 120 FPVTPGQLKQ AGEASDQLMI SCNNCPQACY APPWLLASPN LSLGPPGTN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-30 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0071s0250.1.p |