PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0071s0249.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 115aa MW: 12784.8 Da PI: 10.2386 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.8 | 1.8e-13 | 17 | 68 | 11 | 57 |
HHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 11 qleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 le+ e+++ r+psa ++ +++++l +L+ ++V++WFqN++a++k+ Kaladp0071s0249.1.p 17 DLEIYMEVYKGgLRNPSAGQIHQITAHLssfgKLQGKNVFYWFQNHKARDKQ 68 5677788999889*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 81.2 | 1.3e-26 | 16 | 69 | 11 | 64 |
Wus_type_Homeobox 11 eQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + ++i e+yk Glr+P++ +i++ita+L+++Gk+++kNVfyWFQN+kaR++q+ Kaladp0071s0249.1.p 16 TDLEIYMEVYKGGLRNPSAGQIHQITAHLSSFGKLQGKNVFYWFQNHKARDKQR 69 6789999**********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 3.2E-11 | 16 | 68 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.94E-7 | 29 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-4 | 31 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MPRCSSVHGN QMETGTDLEI YMEVYKGGLR NPSAGQIHQI TAHLSSFGKL QGKNVFYWFQ 60 NHKARDKQRL KKKKLLMVKQ HPQSCCYYAS LSSQMPATRQ GSVTVDAAAL IIGL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251286.1 | 4e-23 | WUSCHEL-related homeobox 3 | ||||
Refseq | XP_015057299.1 | 4e-23 | WUSCHEL-related homeobox 3-like | ||||
Refseq | XP_025809937.1 | 6e-23 | putative WUSCHEL-related homeobox 2 | ||||
Swissprot | A2XZR3 | 4e-23 | WOX2_ORYSI; Putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A287ELV7 | 2e-22 | A0A287ELV7_HORVV; Uncharacterized protein | ||||
STRING | OPUNC05G01220.1 | 5e-23 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-21 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0071s0249.1.p |