PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0230.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 306aa    MW: 34945.6 Da    PI: 6.2494
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.32.9e-27168954128
                  NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +e+e+yfFs+rd+ky++g+r+nra+ sgyWkatg+dk++l++ +++++g+kk Lvfy gr pk  ktdW+m+eyrl
  Kaladp0071s0230.1.p  16 GEDELYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKAILTAsGSKTIGVKKALVFYAGRPPK--KTDWMMDEYRL 89 
                          67899**********************************99878889***************9..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.2241116IPR003441NAC domain
SuperFamilySSF1019412.62E-3311116IPR003441NAC domain
PfamPF023653.3E-131389IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MHYCYLKFCT EKALFGEDEL YFFSPRDRKY PNGSRPNRAA GSGYWKATGT DKAILTASGS  60
KTIGVKKALV FYAGRPPKKT DWMMDEYRLP ETMIRPSRSE RTMRLDDWVL CRVRQKTNTT  120
KNLHRVPDPP KPESMRYLMQ VEDSLPAVTN NDNEMFKDVM YKHCPVLTSL LTGQPLHGME  180
TNQCASPQEI YKHNSWNSVY EDGSCSDTSP MTVFSFGSFL NPLNEKEIQE NPCGIPLPSK  240
NLSNENNYNL FGTQKMVVQD DMDFCCDLYY EADMFTPSPS SVDMTTDSVF IDGYIQHFSS  300
PPYKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-421212265171NO APICAL MERISTEM PROTEIN
1ut4_B5e-421212265171NO APICAL MERISTEM PROTEIN
1ut7_A5e-421212265171NO APICAL MERISTEM PROTEIN
1ut7_B5e-421212265171NO APICAL MERISTEM PROTEIN
4dul_A5e-421212265171NAC domain-containing protein 19
4dul_B5e-421212265171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651145.26e-77PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A438DTI41e-75A0A438DTI4_VITVI; NAC transcription factor ONAC010
TrEMBLF6GTZ41e-75F6GTZ4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03080.t012e-76(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-46NAC-like, activated by AP3/PI