PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0071s0216.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 20907.5 Da PI: 9.0042 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.3 | 1.8e-15 | 58 | 109 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++Y+k+L+ Kaladp0071s0216.1.p 58 QRMTHIAVERNRRKQMNEYLAVLRTLMPSS---YAQRGDQASIIGGAINYVKELE 109 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.11E-19 | 56 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-14 | 56 | 113 | No hit | No description |
PROSITE profile | PS50888 | 16.031 | 57 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-12 | 58 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-16 | 58 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-10 | 63 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKFTTPDGLG IKESNGEDKQ SLLTTAPEPS PAKDPPVAAR RKRRRTKACK NKEEVENQRM 60 THIAVERNRR KQMNEYLAVL RTLMPSSYAQ RGDQASIIGG AINYVKELEQ LLQTLEAQKS 120 TKNPKQQDDH HSPFANFFTF PQYTAGATAA TPTSTTDGDD EVAAEGRHGA AEIEVTMVES 180 HANVKILAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 44 | RKRRR |
2 | 40 | 45 | RKRRRT |
3 | 58 | 69 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272971.1 | 1e-66 | PREDICTED: transcription factor bHLH96 | ||||
Swissprot | Q9SK91 | 2e-51 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A1U8B9D6 | 2e-65 | A0A1U8B9D6_NELNU; transcription factor bHLH96 | ||||
STRING | XP_010272971.1 | 4e-66 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 6e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0071s0216.1.p |
Publications ? help Back to Top | |||
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