PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0071s0059.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 455aa    MW: 49362 Da    PI: 7.1843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0071s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014324346123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+k+F ++  L++H  +H
  Kaladp0071s0059.1.p 324 FECLVCHKVFATHPALVKHAGKH 346
                          89*****************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.1E-5105129IPR007087Zinc finger, C2H2
SMARTSM003550.075105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576674.95E-7324346No hitNo description
SMARTSM003550.015324346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723324351IPR007087Zinc finger, C2H2
PROSITE patternPS000280326346IPR007087Zinc finger, C2H2
SuperFamilySSF576674.95E-7382409No hitNo description
PfamPF139121.8E-10387409IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4387409IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.19387409IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847387409IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSPDSSMNER ARQLCDRGRS LGGHMRSRVA EAEDAAREAV KLASLCDYSD DEDEEEVEED  60
EQVDDEQVDE DDKDSMVEEA KEKELRPNSK KRDKRAEDSS SGKKFVCVKC GKGFQSQKAM  120
CGHMACHSEK DKSLSTLAAH KSSSKSSWFN PKLVMDSHSD TETGVAAAAA AGPALRRRSK  180
RVKYKSSNGA GGPSAGHNAG PKPNFSVPNY NGGSSVSVVE NEQEEVAKCL MMLSRDSGKW  240
GGLNSVGDSS DLSVKMEDRP GFKVVSGGRI GVRLKRGLDE LAKELRSNDS CNLGAWNNSV  300
QKIDSACTNV VSSRTCAYNE GDKFECLVCH KVFATHPALV KHAGKHSRRS AESDAHSVET  360
NMSPPTPDLR KGKGKMDKSC GSKRVKHECP VCLKAFRSGQ ALGGHKRIHL TSGGLDELRP  420
INEQVPLQDS SSQAHSCIDL NQPAPLEDHE FLPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-19C2H2-like zinc finger protein