PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0139.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 320aa    MW: 35305.6 Da    PI: 8.4543
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0139.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17e-1949110257
                          T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+t+t++q+++L++l+++   r p+ e++++++++l    +++ ++V++WFqN++a+e++
  Kaladp0070s0139.1.p  49 STRWTPTTDQIRILKDLYYNngVRSPTVEQIQRISARLrqygKIEGKNVFYWFQNQKARERQ 110
                          58*****************8678*************************************97 PP
2Wus_type_Homeobox108.24.9e-3548112265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++tRWtPt++Qi+iL++ly+ +G+r+P+ e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Kaladp0070s0139.1.p  48 SSTRWTPTTDQIRILKDLYYnNGVRSPTVEQIQRISARLRQYGKIEGKNVFYWFQNQKARERQKR 112
                          689***************9779*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-829110IPR009057Homeodomain-like
SuperFamilySSF466892.78E-1130111IPR009057Homeodomain-like
PROSITE profilePS5007110.93245111IPR001356Homeobox domain
CDDcd000862.30E-746112No hitNo description
SMARTSM003896.8E-547115IPR001356Homeobox domain
PfamPF000462.9E-1650110IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEAQQQQHNT MMGDDLGGGK LAATSFTRAQ TNSSNNHSLV NNNGGRRSST RWTPTTDQIR  60
ILKDLYYNNG VRSPTVEQIQ RISARLRQYG KIEGKNVFYW FQNQKARERQ KRRFNTTSTT  120
NNNTAPAPLP PSSTVCKPSS LDSSTPHIHT AAAAAAAASK YSDINNNQNL IYPAGHNQMS  180
GFGYAASVTM EKSFRDCSIS TGGSSFGWAK GGMTDHHLSR HPYPHTSPYA IYNQRKSINS  240
DEYHELLASS TSDHHEHGDN RGPEIETLPL FPMHGEDINY GFCHLNSAET DGWFNRDVGS  300
GSRASLELSL NSYAGMDHT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378227.16e-72PREDICTED: protein WUSCHEL
TrEMBLA0A445M4472e-69A0A445M447_GLYSO; Protein WUSCHEL
TrEMBLK7K4872e-69K7K487_SOYBN; Uncharacterized protein
STRINGXP_009378227.12e-71(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-43WOX family protein