PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0104.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 651aa    MW: 72099.8 Da    PI: 10.0857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07536585147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
  Kaladp0070s0104.1.p 536 RRPFSVSEVEALVQAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 585
                          678999********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.9E-7346436IPR029071Ubiquitin-related domain
PROSITE profilePS500538.655350420IPR000626Ubiquitin domain
PROSITE profilePS5129415.812531590IPR017930Myb domain
SMARTSM007172.9E-7535588IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10536586IPR009057Homeodomain-like
SuperFamilySSF466891.71E-15537618IPR009057Homeodomain-like
CDDcd116605.87E-17537587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVFQKRLDYG FSGYQVPPTP RAARSARRRA SSFKKKVDEN QMCAFDLLAT LAGKILLEGE  60
KSVGVGRCEV EQDSKKKQYL PHKSLKVEPH DSSSYQPSLK STNNVSEVHN PEPTLKLSPP  120
CSIKASSDSG HLGHPIKVKA AAFQPDPLIK PEVDKAIKSE PPVKPAVGVE AGTYSCRKFE  180
VRKLEPEPPP HSGSAANAPP LYGDHATGDT SCVKTVSRDD DEKSSGCTTH PSTLSKPYMS  240
SPPRIVDRRI RKFLAYKYWN VAPKLKDGEE AHHTDVDKQR RCCFRRQRSQ RNYPFKKRKM  300
YCHGSLSNSD DGATDKQMPC SNIDAFNSVV GTSSSIMGGN VRFKRRDSHV KLRIKSFRVP  360
ELFIEISEMA TVSSLKRTVM EAVTAILGDG LRVGVLLHGK KIGDDSKTLL QTGISHDNQL  420
DSVGFSLEPN TSPNPPSLTS ANSPHILHSE TRQPLTRYVS QEVGRGGAAD MPLTSIGNFV  480
ESDHDSAPSP DLTVDKYAAN SRAIVPVQAL KMEAAPAPPP NHRKSKHSEA GQRRIRRPFS  540
VSEVEALVQA VEKLGTGRWR DVKLQAFDNA KHRTYVDLKD KWKTLVHTAK ISPQQRRGEP  600
VPQELLDRVL DAHAYWSLQQ AKQQLKHQRE TRMFLELEPA PAPAAAHNRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-535206261107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289298QRNYPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283389.20.0PREDICTED: telomere repeat-binding protein 5
TrEMBLF6GV030.0F6GV03_VITVI; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-108TRF-like 2