PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0083.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 162aa    MW: 17647.8 Da    PI: 9.429
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.7e-211474257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+++tkeql  Le+l+e+  r+psae+++ ++k+l    +++ ++V++WFqN++a++++
  Kaladp0070s0083.1.p 14 SSRWNPTKEQLSLLESLYEQgIRTPSAEQIQSITKRLqaygHIEGKNVFYWFQNHKARQRQ 74
                         58*****************99**************************************97 PP
2Wus_type_Homeobox116.21.5e-371476365
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++RW+Pt+eQ+ +Le+ly++G+rtP++e+iq it++L++yG+ie+kNVfyWFQN+kaR+rqkq
  Kaladp0070s0083.1.p 14 SSRWNPTKEQLSLLESLYEQGIRTPSAEQIQSITKRLQAYGHIEGKNVFYWFQNHKARQRQKQ 76
                         79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-14783IPR009057Homeodomain-like
PROSITE profilePS5007111.3531075IPR001356Homeobox domain
SMARTSM003893.3E-71279IPR001356Homeobox domain
CDDcd000861.84E-71371No hitNo description
Gene3DG3DSA:1.10.10.601.3E-91484IPR009057Homeodomain-like
PfamPF000461.0E-181474IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDPSNAGSSS TGPSSRWNPT KEQLSLLESL YEQGIRTPSA EQIQSITKRL QAYGHIEGKN  60
VFYWFQNHKA RQRQKQKMDQ QQMMMCGAVS SNNALNNVVA VNNLNNVDNA AADGAYFNRF  120
YYHSPPPISP SGVAAVAGCA LPLLPGPHSG KSSHNQILIF I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.16e-22WUSCHEL related homeobox 2