PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0070s0077.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 207aa MW: 22645 Da PI: 8.5805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0070s0077.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F++ L H +H Kaladp0070s0077.1.p 42 FECRTCGKRFTTFQALGGHRASH 64 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.3E-4	40	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.61E-8	40	112	No hit	No description
Pfam	PF13912	5.6E-11	41	66	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	42	64	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.591	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.3E-10	89	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.141	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.1	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MSSSCEETPS TPTVEMAATC LMLLSKLDES HAQPSRDDVR AFECRTCGKR FTTFQALGGH 60 RASHKKPKPD HDCFSQSKKT TAAPPRPKAH ECAICGAEFA LGQALGGHMR RHRDGASGGV 120 LEIGSGDTTT FGAVHVKCKR VCLKMDLNLT PGENDLQTCV PDLKLQLGKR ESEMRMESGT 180 VQEYDLRLQM IKRRRFRDAL LGLVAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023748803.1	1e-39	zinc finger protein ZAT12-like
TrEMBL	A0A2U1LZ13	4e-40	A0A2U1LZ13_ARTAN; Zinc finger, C2H2
STRING	XP_004294603.1	2e-37	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	6e-31	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0070s0077.1.p