PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0070s0016.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 312aa    MW: 34180.4 Da    PI: 8.2647
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0070s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-1839100257
                          T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+t+t++q+++L++l+++     p+ e++++++++l    +++ ++V++WFqN++a+e++
  Kaladp0070s0016.1.p  39 STRWTPTTDQIRILKDLYYNngVTSPTVEQIQRISDRLrqygKIEGKNVFYWFQNQKARERQ 100
                          58*****************85679************************************97 PP
2Wus_type_Homeobox106.51.7e-3438101264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          ++tRWtPt++Qi+iL++ly+ +G+ +P+ e+iqri+ +L++yGkie+kNVfyWFQN+kaRerqk
  Kaladp0070s0016.1.p  38 SSTRWTPTTDQIRILKDLYYnNGVTSPTVEQIQRISDRLRQYGKIEGKNVFYWFQNQKARERQK 101
                          689***************9779*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-819100IPR009057Homeodomain-like
SuperFamilySSF466899.64E-1120101IPR009057Homeodomain-like
PROSITE profilePS5007110.81935101IPR001356Homeobox domain
CDDcd000865.13E-736101No hitNo description
SMARTSM003893.6E-537105IPR001356Homeobox domain
PfamPF000469.4E-1640100IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMGDDLGGGK LAATSFTRAQ TNSSNNHSLV NNNGGRRSST RWTPTTDQIR ILKDLYYNNG  60
VTSPTVEQIQ RISDRLRQYG KIEGKNVFYW FQNQKARERQ KTRFNTTSTT TNNTAPAPLP  120
PASTVWKPSS LDSSTPHIHT AAAAAAAASK YSDINNNQNL IYPAGHNQMS GFGYAASVTM  180
EKSFRDCSIS TGGSSFGWAK GGMTDHHLSR HPYPHTSPYA IYNQRKSINS DAYHELLAST  240
SDHHEHGDHS RGAEIETLPL FPMHGEDINY GFCHLNSSAE TDGSWFNRDV GGGSRASLEL  300
SLNSYAGMDH T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517180.22e-68protein WUSCHEL
RefseqXP_014519639.25e-68protein WUSCHEL
RefseqXP_028211599.12e-68protein WUSCHEL-like
TrEMBLA0A1Q3D8E11e-68A0A1Q3D8E1_CEPFO; Homeobox domain-containing protein
STRINGGLYMA01G37190.29e-68(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-40WOX family protein