PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0304.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 347aa    MW: 37499.8 Da    PI: 8.3459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0304.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000823659123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         +kC+ C+k  s+ s +  H    H
  Kaladp0067s0304.1.p 36 FKCHVCHKKLSTASGMAIHVLQvH 59
                         89***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.727766IPR003656Zinc finger, BED-type
SuperFamilySSF576674.76E-51161No hitNo description
SMARTSM003557.71235IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3281235IPR007087Zinc finger, C2H2
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.13659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGKKKKRAST KYWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MAIHVLQVHK  60
ETVSTVPNAK PGRESTEIDI YGMQGIPPDV LAAHYGEEEE ETPSKLTKYD PSSQLHGAMT  120
SGSFSLSHPP QSAAVPPHPL YNPAMPRPPI GWPLPPRPQP WLQPHSSGHL LGPMGAIHRP  180
LFPVHNVQPP PAAIPAMQSP LPTVPPAPPS FASISVSQPL FPVGSSTNLP AQSSPMLSAS  240
IPLSSPMGSF NGTGGTVMNM HSYASGPNTG GPSIGPPPVI ANKAPAVNSS ANEVYLVWDD  300
EAMSMEERRM SLPKYQVHDE SSQMSSVDAA IDRRILESRL AHRMAF*
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734728.11e-163PREDICTED: protein SUPPRESSOR OF FRI 4-like
SwissprotQ9C5G01e-129SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A1U8NA111e-162A0A1U8NA11_GOSHI; protein SUPPRESSOR OF FRI 4-like
STRINGXP_009363258.11e-154(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]