PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0050.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 347aa    MW: 38378.1 Da    PI: 8.8273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33912301128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                          lp+G++F+Ptd+e+v ++L++k+ +++     ++++   ++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++    
  Kaladp0067s0050.1.p  91 LPAGVKFDPTDQEIV-QHLEAKAVATHklhplIDEFIPtLEGEnGICYTHPEKLP-GVRKDGLIRHFFHRPSKAYTTGTRKRRKVSadee 178
                          799************.77888865555476543332222443346**********.555666677******************7444555 PP

                  NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v+  +ge++g kk+Lv+y   gr++k+ekt+Wvmh+y++
  Kaladp0067s0050.1.p 179 ggETRWHKTGKTRPVFI-SGEVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHI 230
                          44778************.999***********66589**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-3883249IPR003441NAC domain
PROSITE profilePS5100533.62291249IPR003441NAC domain
PfamPF023653.7E-1592230IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTWRSSVPDS RVSVREIDLI VSPPPPLQFP PAQLLPPPSS AQTSTRDGKV NGREVVEGHG  60
DVKVREVSCP SCGRHVQIQD QGGFIQELPG LPAGVKFDPT DQEIVQHLEA KAVATHKLHP  120
LIDEFIPTLE GENGICYTHP EKLPGVRKDG LIRHFFHRPS KAYTTGTRKR RKVSADEEGG  180
ETRWHKTGKT RPVFISGEVK GFKKILVLYT NYGRQRKPEK TNWVMHQYHI GGSEEEKEGE  240
LVVSKVFYQT QPRQCGGGSV GKEISDSHSH EPTRTNQQQQ NVISSNDVGY VEFYTPGHHQ  300
YMMSYGGGSP HQLMQNGGFH GDGSPFIRLG GSASKESISG MAERRG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278661.11e-130PREDICTED: NAC domain-containing protein 73 isoform X2
SwissprotF4HY611e-106NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A438IGM01e-128A0A438IGM0_VITVI; NAC domain-containing protein 73
STRINGXP_008225157.11e-127(Prunus mume)
STRINGEMJ128431e-127(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-107NAC domain containing protein 10