PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0066s0082.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 330aa MW: 37495.6 Da PI: 7.316 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.5e-12 | 191 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Kaladp0066s0082.2.p 191 YQPDICKDYKETGYCGYGDSCKFMHD 216 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.35E-9 | 189 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 190 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 190 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-12 | 191 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 191 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 3.9E-13 | 266 | 310 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 9.6E-9 | 268 | 309 | No hit | No description |
SuperFamily | SSF57850 | 2.36E-12 | 268 | 312 | No hit | No description |
SMART | SM00184 | 2.7E-4 | 269 | 306 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 9.70E-8 | 269 | 310 | No hit | No description |
PROSITE profile | PS50089 | 10.498 | 269 | 307 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 284 | 293 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSERKEQPDF AQQQPEPVCK FLKAPARNKN FRKRTHDDDG DEDEEKGVEN AAVNKRKQQK 60 DKGLSFSTGG LKHAADADNG GDAKQPIFQF ESSKEIQVQH DNKATATLET ETDFSRDARA 120 IRERVLKQAE EALKGKKKGE GDEKLYKGIH GYTDYKAGFR REHTISSEKA GGSHGPLRAS 180 AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKERKRK 240 LALKALNSDE EDDEPSDEDD DEDGLPFACF ICRKSFVDPV VTTCKHYFCE HCALKHHSKN 300 KKCFVCNKPT LGIFNTAHEI RKRIASQGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-63 | 101 | 324 | 113 | 317 | RING finger protein 113A |
5z58_M | 3e-63 | 101 | 324 | 113 | 317 | RING finger protein 113A |
6ff4_t | 3e-63 | 101 | 324 | 113 | 317 | RING finger protein 113A |
6ff7_t | 3e-63 | 101 | 324 | 113 | 317 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233105.1 | 1e-169 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-150 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A1J6KDY7 | 1e-168 | A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1 | ||||
STRING | XP_009609000.1 | 1e-168 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-126 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0066s0082.2.p |