PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0082.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 330aa    MW: 37495.6 Da    PI: 7.316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12191216126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF+H+
  Kaladp0066s0082.1.p 191 YQPDICKDYKETGYCGYGDSCKFMHD 216
                          67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-9189221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878190218IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7190217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12191221IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10191216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.9E-13266310IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139209.6E-9268309No hitNo description
SuperFamilySSF578502.36E-12268312No hitNo description
SMARTSM001842.7E-4269306IPR001841Zinc finger, RING-type
CDDcd001629.70E-8269310No hitNo description
PROSITE profilePS5008910.498269307IPR001841Zinc finger, RING-type
PROSITE patternPS005180284293IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSERKEQPDF AQQQPEPVCK FLKAPARNKN FRKRTHDDDG DEDEEKGVEN AAVNKRKQQK  60
DKGLSFSTGG LKHAADADNG GDAKQPIFQF ESSKEIQVQH DNKATATLET ETDFSRDARA  120
IRERVLKQAE EALKGKKKGE GDEKLYKGIH GYTDYKAGFR REHTISSEKA GGSHGPLRAS  180
AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW DEAEKERKRK  240
LALKALNSDE EDDEPSDEDD DEDGLPFACF ICRKSFVDPV VTTCKHYFCE HCALKHHSKN  300
KKCFVCNKPT LGIFNTAHEI RKRIASQGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-63101324113317RING finger protein 113A
5z58_M3e-63101324113317RING finger protein 113A
6ff4_t3e-63101324113317RING finger protein 113A
6ff7_t3e-63101324113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.11e-169PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-150C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY71e-168A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.11e-168(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-126C3H family protein