PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0064s0043.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 586aa    MW: 64597.2 Da    PI: 4.8634
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0064s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.61.9e-1402215801374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cA+a+++++l+ a++l++++  la++++ +m+++a+yf+eALa+r+++    +y    p+e+   n s +   l  f+e++P+
  Kaladp0064s0043.1.p 221 LVHTLMACADAIQQSNLKVAETLINQIGMLAASQAGAMRKVATYFAEALARRIFN----CY----PQESI--NPSFTDLLLMHFYETCPY 300
                          689***************************************************9....44....33333..22333333446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea++++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++k++l+e+g rLa++Ae+++v+fef+ 
  Kaladp0064s0043.1.p 301 LKFAHFTANQAILEAFSNKKKVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSPDNKDRLREVGLRLAQLAETIHVDFEFRG 390
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L++kp   E++aVn+v++lhrll++++++e+    vL ++k+++P++v+vveqea+hn++ Fl+rf+e+l+yys++f
  Kaladp0064s0043.1.p 391 FVANSLADLDASMLELKPseTESVAVNSVFELHRLLARPGAVEK----VLTVIKEIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTMF 476
                          ******************99999*********************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +   ++++++++++++lgr+i++vvaceg +r+erhetle+Wr+r+++aGF++v+++++a kqa++ll  ++ +dgyrvee++g+
  Kaladp0064s0043.1.p 477 DSLEGS---TNSQDKVMSEVYLGRQICDVVACEGLDRVERHETLEQWRARFGSAGFESVHIGSNAFKQARMLLDLFSgGDGYRVEENNGC 563
                          ***999...79999**************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Kaladp0064s0043.1.p 564 LMLGWHTRPLIATSAWR 580
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.0E-3542108IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.7E-3442115No hitNo description
PROSITE profilePS5098568.07195559IPR005202Transcription factor GRAS
PfamPF035146.4E-138221580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MKRENQYLYP HPDPSAAGSS SSTGGKTKVC WEDDSLPEAG MDELLAVLGY KVKSSDMAEV  60
AQKLEQLEEV MGSVREDGLS HLASETVHYN PSDISNWIEN MLSEFVPPSF DSNLQPLPPT  120
SIDSFIPQVG PVDFPVMLDQ PKLSPIFGGG DSSSSLPDYD LKAIPGNRII YPQNQQQQQL  180
EELSSSANKR LKPTAPPTEA PLTTSTRPVV LVDSQEAGVR LVHTLMACAD AIQQSNLKVA  240
ETLINQIGML AASQAGAMRK VATYFAEALA RRIFNCYPQE SINPSFTDLL LMHFYETCPY  300
LKFAHFTANQ AILEAFSNKK KVHVIDFSMN QGMQWPALMQ ALALRPGGPP AFRLTGIGPP  360
SPDNKDRLRE VGLRLAQLAE TIHVDFEFRG FVANSLADLD ASMLELKPSE TESVAVNSVF  420
ELHRLLARPG AVEKVLTVIK EIKPEIVTVV EQEANHNGPV FLDRFTESLH YYSTMFDSLE  480
GSTNSQDKVM SEVYLGRQIC DVVACEGLDR VERHETLEQW RARFGSAGFE SVHIGSNAFK  540
QARMLLDLFS GGDGYRVEEN NGCLMLGWHT RPLIATSAWR IGSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6421657914378Protein SCARECROW
5b3h_A8e-6521657913377Protein SCARECROW
5b3h_D8e-6521657913377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594609.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9UFS90.0A0A2C9UFS9_MANES; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein