PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0180.6.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24400.7 Da    PI: 5.7896
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0180.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n++ rqvtfskRr g++KKA+EL +LCdae+a+i+fs tgkl+eys+
  Kaladp0062s0180.6.p  9 KKIDNTTARQVTFSKRRRGLFKKAHELATLCDAEIALIVFSATGKLFEYSN 59
                         68***********************************************95 PP
2K-box43.91e-1577171599
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          +  ++ + + +  +  +a L ke+++  +e R+l+Ge L+ Lsl+eL+qLe+ Le +l ++ ++K e   ++i+ l++k  el een++L
  Kaladp0062s0180.6.p  77 QAADQPSLELQLESSTYAMLSKELSERTNEVRRLKGEHLQGLSLEELKQLEKSLEVGLLRVVETKGEKAEREINALRQKGAELMEENERL 166
                          4455666677888889999*******9*************************************************************** PP

                K-box  95 rkkle 99 
                          r++le
  Kaladp0062s0180.6.p 167 RMQLE 171
                          **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-30385IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.21E-40375No hitNo description
PRINTSPR004043.9E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.52886176IPR002487Transcription factor, K-box
PfamPF014862.7E-1390170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVRQKIQIKK IDNTTARQVT FSKRRRGLFK KAHELATLCD AEIALIVFSA TGKLFEYSNS  60
SMRQVIERHS LHNENKQAAD QPSLELQLES STYAMLSKEL SERTNEVRRL KGEHLQGLSL  120
EELKQLEKSL EVGLLRVVET KGEKAEREIN ALRQKGAELM EENERLRMQL ESMPEVETVA  180
ASSVPEQGQS SESMAADPPP YDDSSDTSLK LGLPYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21174174MEF2C
5f28_B1e-21174174MEF2C
5f28_C1e-21174174MEF2C
5f28_D1e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872513.14e-96MADS-box protein JOINTLESS-like
RefseqXP_023872514.14e-96MADS-box protein JOINTLESS-like
RefseqXP_023872515.14e-96MADS-box protein JOINTLESS-like
RefseqXP_023872516.14e-96MADS-box protein JOINTLESS-like
SwissprotQ9FUY64e-87JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A1U7ZMM08e-93A0A1U7ZMM0_NELNU; MADS-box protein SVP isoform X1
TrEMBLA0A1U7ZZ567e-93A0A1U7ZZ56_NELNU; MADS-box protein SVP isoform X2
STRINGXP_010254524.11e-93(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-65MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]