PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0062s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24429.8 Da PI: 8.4285 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.9 | 4.4e-30 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC ++p++ p++q +++ +++k++G++ ++++l+a+++++r ++++sl+yeA+ r+ dP+yGavg++++ ++ Kaladp0062s0030.1.p 4 SCNGCRVLRKGCPDDCNIRPCLswitsPEAQGNATVFLAKFYGRAGLMNFLNATSDHHRAEIFKSLLYEACGRIVDPIYGAVGLLWSNNW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ++++++++l +++ Kaladp0062s0030.1.p 94 PHCEAAVDAVLSGRQ 108 ******999887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.19 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-24 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MRTSCNGCRV LRKGCPDDCN IRPCLSWITS PEAQGNATVF LAKFYGRAGL MNFLNATSDH 60 HRAEIFKSLL YEACGRIVDP IYGAVGLLWS NNWPHCEAAV DAVLSGRQIV PIQNPHNPSG 120 HAIAALNSFD IRHVARPSPP EPDMAPRPAI RTKPRSARCP KHNPVRANRT ELGGIGPSDG 180 SGFSVETVEG SVANRVNPNQ CRGSDDRLEM GLELSLNLGP GPSKCI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282602.1 | 3e-70 | PREDICTED: LOB domain-containing protein 40 | ||||
Swissprot | Q9CA30 | 3e-58 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A438ED37 | 7e-69 | A0A438ED37_VITVI; LOB domain-containing protein 41 | ||||
TrEMBL | F6HEW8 | 7e-69 | F6HEW8_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03540.t01 | 1e-69 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-60 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0062s0030.1.p |