PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0189.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 378aa    MW: 40727.7 Da    PI: 9.8468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0189.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-1981126147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+W++eEdell  +v+++G ++W++I+r ++ gR++k+c++rw + 
  Kaladp0060s0189.1.p  81 KGPWSPEEDELLQSLVEKHGARNWSLISRAIP-GRSGKSCRLRWCNQ 126
                          79******************************.***********985 PP
2Myb_DNA-binding54.42.8e-17133177147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++T+eEde +++a+++ G++ W+tIar ++ gRt++ +k++w++ 
  Kaladp0060s0189.1.p 133 RRPFTAEEDEVILRAHARVGNR-WATIARLLN-GRTDNAVKNHWNST 177
                          679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.46276131IPR017930Myb domain
SuperFamilySSF466895.24E-3279174IPR009057Homeodomain-like
SMARTSM007172.2E-1780129IPR001005SANT/Myb domain
PfamPF002499.2E-1981126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2782134IPR009057Homeodomain-like
CDDcd001673.22E-1683125No hitNo description
SMARTSM007174.2E-15132180IPR001005SANT/Myb domain
PfamPF002493.5E-14133177IPR001005SANT/Myb domain
PROSITE profilePS5129421.372133182IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.9E-23135182IPR009057Homeodomain-like
CDDcd001671.49E-11135178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MQRGNGSAAD ACPSSQLYPK IPPLTHSTAF PQRCQRQRRV YNRRRVRESR DPTDSIHPRS  60
KVSTLNRSMA SGGGVLGEKI KGPWSPEEDE LLQSLVEKHG ARNWSLISRA IPGRSGKSCR  120
LRWCNQLSPE VERRPFTAEE DEVILRAHAR VGNRWATIAR LLNGRTDNAV KNHWNSTLKR  180
KCPWIVEDHT TGGGGGELKR SVSAGAAASP SGSDASDSSV HILSSIPAGR KTVGGLLWLG  240
GNETASYGDD GVATELSLSL SMPGAESSQS SGGQPQLIEF GKQPQPEPAV KMGDVTTELG  300
LAAVGSQESR KEKEKEKEEE IIGGSGSQPL TTEFWGTMRE MIRKEVRSYM SGGGVNGGGV  360
CARGDMAMTR IRIGRSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-39781821105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027345753.11e-86transcription factor MYB44-like
SwissprotO231605e-68MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A438KPW09e-84A0A438KPW0_VITVI; Transcription factor MYB44
STRINGVIT_07s0129g01050.t012e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-63myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]