PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0060s0035.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 378aa    MW: 43256.3 Da    PI: 5.9572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0060s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775.1e-55101382129
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          ppGfrFhPtdeelv +yLkkkv+++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Kaladp0060s0035.1.p  10 PPGFRFHPTDEELVGYYLKKKVAAQKIDL-DVIRDIDLYRIEPWDLQEkcwIGYEEQNEWYFFSHKDKKYPTGTRTNRATVAGFWKATGR 98 
                          9****************************.9***************953543344677******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  Kaladp0060s0035.1.p  99 DKAVYD-KRKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-596158IPR003441NAC domain
PROSITE profilePS5100558.7029158IPR003441NAC domain
PfamPF023651.9E-2810137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDQCVESCIP PGFRFHPTDE ELVGYYLKKK VAAQKIDLDV IRDIDLYRIE PWDLQEKCWI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATVA GFWKATGRDK AVYDKRKLIG MRKTLVFYKG  120
RAPNGQKSDW IMHEYRLETD ENGPPQEEGW VVCRTFKKRT TTSKPKSIIT GPAWDSSAFF  180
YDESGGSSSV IDSPLDYITR QKHQPLQSTS FLSQNFFCKQ ELELSENNPI ITNNSSLIKS  240
QNHQFVQLPQ LESPSLPVLK RPSSSLSLIS DDNDKNKKNE AYHISSSKVT DWRALDKFVA  300
SQLSQGDNYD IDHPGNQMIP AGFGTLQDEE AFQVTMQNGD KLIFNDGRND RLNNGFYLGS  360
NDRNLESDNT GICIFES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-50216410171NO APICAL MERISTEM PROTEIN
1ut4_B5e-50216410171NO APICAL MERISTEM PROTEIN
1ut7_A5e-50216410171NO APICAL MERISTEM PROTEIN
1ut7_B5e-50216410171NO APICAL MERISTEM PROTEIN
4dul_A5e-50216410171NAC domain-containing protein 19
4dul_B5e-50216410171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028090380.11e-159NAC domain-containing protein 37-like
RefseqXP_028090381.11e-159NAC domain-containing protein 37-like
RefseqXP_028090382.11e-159NAC domain-containing protein 37-like
RefseqXP_028090383.11e-159NAC domain-containing protein 37-like
SwissprotQ9SL411e-137NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2K1ZMJ01e-155A0A2K1ZMJ0_POPTR; NAC family protein
STRINGPOPTR_0005s11870.11e-154(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-134vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]