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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Kaladp0059s0359.2.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 677aa MW: 73594.9 Da PI: 6.9371 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.7 | 6.1e-29 | 218 | 271 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Kaladp0059s0359.2.p 218 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 271
79*******************.********************************8 PP
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| 2 | Response_reg | 74.4 | 4.2e-25 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl+vdD+p+ + +l+++l++ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll +e +lp+i+++a ++++ + +
Kaladp0059s0359.2.p 38 VLVVDDDPTCLAILERMLKSCLY-EVTKCNRAEVALSLLRENKngYDVVISDVHMPDMDGFKLLVYVGSEM-DLPVIMMSADDTKAVVMK 125
89*********************.***************999999**********************7755.8***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
++ Ga d+l Kp+ +++l +
Kaladp0059s0359.2.p 126 VVTHGACDYLIKPVRMDALKN 146
****************99976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 3.3E-168 | 9 | 665 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 8.82E-35 | 35 | 160 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 2.6E-41 | 35 | 178 | No hit | No description |
| SMART | SM00448 | 3.6E-28 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 40.582 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 7.9E-23 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.61E-26 | 39 | 151 | No hit | No description |
| SuperFamily | SSF46689 | 3.94E-20 | 215 | 275 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 10.732 | 215 | 274 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.0E-30 | 217 | 276 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 7.9E-25 | 218 | 271 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 6.2E-8 | 220 | 270 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 677 aa Download sequence Send to blast |
MNLSSGGKRS MSAVASSCGG NWRPVDAASD RFPAGLRVLV VDDDPTCLAI LERMLKSCLY 60 EVTKCNRAEV ALSLLRENKN GYDVVISDVH MPDMDGFKLL VYVGSEMDLP VIMMSADDTK 120 AVVMKVVTHG ACDYLIKPVR MDALKNIWQH VVRKKKHEWK DLEQSRSGEE VENRIAKQTE 180 EADYSSSANE GGSWRNSKRR KEEEEDVDDR DDTSTLKKPR VVWSVELHQQ FVSAVNQLGI 240 DKAVPKKILE LMNVPGLTRE NVASHLQKYR LYLRRISGGV PQHPGVLLNN GFMGSQEGPF 300 GAMSSLTGLD LQAIAASGHL PAQSLAGIQS AVFNKGNTLP GMTMAGIDQR NIFSFENPKT 360 RFGEVQHLQQ MANGKQINLL HGIPTNMESK QLASLHHSES SIGSVNMQPS PHSNSSGSLM 420 MQAPQPQSRA QLLNEPASAQ LSKIPSSIGP LSVSNGIGVV RMRNNNPAHD NRLTGFSPVS 480 KPAPVTSFPM DNSELPGNSF PLASAPGVTA AKGTLHDETN SRIKGPVGYG LNYDMFNETN 540 QLRSHPWELR ALGVQFEGSH RPNNLQGNFD ISPSVKVQQQ NYSVGTTLNA GSLPAVYSSG 600 ERMQQPYGAQ NTSQQITGHS SVKIKGESMS DFDSLPQPYG QEDLMSALLK QHPGSNGAAD 660 DEFDFGGYPP IGNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-22 | 217 | 277 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012084014.1 | 0.0 | two-component response regulator ARR2 | ||||
| Swissprot | Q940D0 | 1e-178 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A067JVF9 | 0.0 | A0A067JVF9_JATCU; Two-component response regulator | ||||
| STRING | XP_002519174.1 | 0.0 | (Ricinus communis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 1e-173 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Kaladp0059s0359.2.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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