PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0059s0238.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 1340aa MW: 150439 Da PI: 5.8446 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 512 | 531 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f r G+Ck+G+rC F+H Kaladp0059s0238.2.p 512 LCKYFKR-GYCKHGNRCWFHH 531 9**9999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 219 | 249 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 223 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.155 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 225 | 248 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 507 | 533 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.695 | 507 | 534 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 509 | 532 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 512 | 531 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 512 | 537 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1340 aa Download sequence Send to blast |
MHSMSEKVWK RKLGVGSEEQ PEFDNEFDQM KASRRRLAYS GNYDNDERRC ECLESFDRIK 60 CDQRFGFPSY GRLIEEHDGR SQLNDDSWYP RKGYVTERER YSSQFRGSAH YCRNGLFKRG 120 FDEHSESSQF TGYKFFRSCD SGSCRRGSEC GQLCQDVYKD SYKRLDDAYL NDLLSDSDRL 180 ESCGHEKDWK RAIDKGRDDY QWRSSDLDSS SDMDSDTPPR KRATSTRICK WFLRGHCWRG 240 SSCWHVHDVS GDDFHRGHSP LRPAGRQGGL LSGDDIRVTD RYLFSPLEIK HNSHTTQDSH 300 VSTRMAGDKT EVTGPNAEGH SKSSWKHIPV VSDEVLQRTI NCEASEQTES DGWRSWGDTS 360 RNKRLATYDS RHRSGSDNAR NLNIGQMGDF DGYASDHKSL KRTERIDLKS NSYFARRRQK 420 IGCRGFAAID GHEFSDGNSD FDFNSCRRRI KTNGRQGRRF SGKRSEIGNF DGKTPTRNAN 480 NASRFKPKRL KKESASDHDH KHLLWKDGSA TLCKYFKRGY CKHGNRCWFH HQTVTLRDPV 540 DMDEKKSPTN QTSPSTDVIP VVESTVHDTS MELRSTKNTK RSHQRKAQNS GRSVGLTPAK 600 FTGEHSETTT SYIEAFPGKK SALETDIQDR RPDKGKKLGC NPEGKCEGGH KKSTEVSIGI 660 RIVPETDMQK DLKERRRKNY DYKEDEGDDN QNKSESANLR AQCDVKTTTA QQIVSGKMLA 720 VDPCVIDLKS LDYEMPSVNE EVTEKTSNDH HSPDLIRVPS ASLGQYICKT GLSKATSASC 780 NAVMESYPPL KNANQSLVEE NSLKTGADLD PQPVSSDMKV GKSQKALSSG FNERLCFERL 840 STEKLVAMPL ERQLELQESC ASMGEPEENH NVDQWIGSCQ DNKLVINQEG TSNTTGCIET 900 AVGEKALLEA DMNDEFVDDK VCDSQELEVD ECQKTNSALG YCGVNSSCAT TVSADQCGEE 960 MLTRETCPVI SIVNTEASFE KQETEEASFD DIGLDMSLEH YIYSSLCLDR YFGNMEDENE 1020 ATTTSYAFPE DTKAVTTSEN PIQQSDGSSA QQTCDGISDT KPILTSGTYH SGLNSGRMTS 1080 TEIEEIPNGL DDERHERCTL NEREKTPGVK LEPTNVGNIF AAETSLHVHE ELNVILAAES 1140 MDRYSDSSCM GRNSETKHTS SWNTSCRGSD FETNISEESG GIPSGPLSER YDIPVSEQEQ 1200 DETDALRLKG PVASSNVNEK SSSVQDSCNA AGKLSCYDSN DSDSKCEESI EDSHEKAFLK 1260 RAVLVLVKEI LDPLWNAGRI TTKDIYKTIA RKSVDKVCGS VQGVSIPRTK DSVDCYLLRN 1320 KPKIAQLVLE YVYMHPVKQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 6e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0059s0238.2.p |