PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0238.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 1340aa    MW: 150439 Da    PI: 5.8446
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0238.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06512531525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          lC++f r G+Ck+G+rC F+H
  Kaladp0059s0238.1.p 512 LCKYFKR-GYCKHGNRCWFHH 531
                          9**9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.6E-5219249IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4223249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155223250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5225248IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4507533IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695507534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5509532IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4512531IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5512537IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1340 aa     Download sequence    Send to blast
MHSMSEKVWK RKLGVGSEEQ PEFDNEFDQM KASRRRLAYS GNYDNDERRC ECLESFDRIK  60
CDQRFGFPSY GRLIEEHDGR SQLNDDSWYP RKGYVTERER YSSQFRGSAH YCRNGLFKRG  120
FDEHSESSQF TGYKFFRSCD SGSCRRGSEC GQLCQDVYKD SYKRLDDAYL NDLLSDSDRL  180
ESCGHEKDWK RAIDKGRDDY QWRSSDLDSS SDMDSDTPPR KRATSTRICK WFLRGHCWRG  240
SSCWHVHDVS GDDFHRGHSP LRPAGRQGGL LSGDDIRVTD RYLFSPLEIK HNSHTTQDSH  300
VSTRMAGDKT EVTGPNAEGH SKSSWKHIPV VSDEVLQRTI NCEASEQTES DGWRSWGDTS  360
RNKRLATYDS RHRSGSDNAR NLNIGQMGDF DGYASDHKSL KRTERIDLKS NSYFARRRQK  420
IGCRGFAAID GHEFSDGNSD FDFNSCRRRI KTNGRQGRRF SGKRSEIGNF DGKTPTRNAN  480
NASRFKPKRL KKESASDHDH KHLLWKDGSA TLCKYFKRGY CKHGNRCWFH HQTVTLRDPV  540
DMDEKKSPTN QTSPSTDVIP VVESTVHDTS MELRSTKNTK RSHQRKAQNS GRSVGLTPAK  600
FTGEHSETTT SYIEAFPGKK SALETDIQDR RPDKGKKLGC NPEGKCEGGH KKSTEVSIGI  660
RIVPETDMQK DLKERRRKNY DYKEDEGDDN QNKSESANLR AQCDVKTTTA QQIVSGKMLA  720
VDPCVIDLKS LDYEMPSVNE EVTEKTSNDH HSPDLIRVPS ASLGQYICKT GLSKATSASC  780
NAVMESYPPL KNANQSLVEE NSLKTGADLD PQPVSSDMKV GKSQKALSSG FNERLCFERL  840
STEKLVAMPL ERQLELQESC ASMGEPEENH NVDQWIGSCQ DNKLVINQEG TSNTTGCIET  900
AVGEKALLEA DMNDEFVDDK VCDSQELEVD ECQKTNSALG YCGVNSSCAT TVSADQCGEE  960
MLTRETCPVI SIVNTEASFE KQETEEASFD DIGLDMSLEH YIYSSLCLDR YFGNMEDENE  1020
ATTTSYAFPE DTKAVTTSEN PIQQSDGSSA QQTCDGISDT KPILTSGTYH SGLNSGRMTS  1080
TEIEEIPNGL DDERHERCTL NEREKTPGVK LEPTNVGNIF AAETSLHVHE ELNVILAAES  1140
MDRYSDSSCM GRNSETKHTS SWNTSCRGSD FETNISEESG GIPSGPLSER YDIPVSEQEQ  1200
DETDALRLKG PVASSNVNEK SSSVQDSCNA AGKLSCYDSN DSDSKCEESI EDSHEKAFLK  1260
RAVLVLVKEI LDPLWNAGRI TTKDIYKTIA RKSVDKVCGS VQGVSIPRTK DSVDCYLLRN  1320
KPKIAQLVLE YVYMHPVKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-10C3H family protein