PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0214.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 336aa    MW: 36136.4 Da    PI: 9.9605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0214.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98e-21137186255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a+++a+++++g
  Kaladp0059s0214.1.p 137 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDEAALRFRG 186
                          7********.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23137195IPR016177DNA-binding domain
PROSITE profilePS5103225.883137194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-33137195IPR001471AP2/ERF domain
SMARTSM003805.5E-38137200IPR001471AP2/ERF domain
PfamPF008471.2E-14137186IPR001471AP2/ERF domain
PRINTSPR003677.8E-12138149IPR001471AP2/ERF domain
CDDcd000185.93E-15145196No hitNo description
PRINTSPR003677.8E-12160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLSDYSQARE MSAMVTALTH VVSGQRPTSE QWLYPTSPLY AASERQSGFA SWSPSGSSSG  60
QKRSRMEQQS RPSAATPPDD KNTVQRHHRI STAGFASSSS PPPSSAAAAV SATQATQMPT  120
PGSATTAEDE GERRRRRYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFDTA EAAARAYDEA  180
ALRFRGNRAK LNFPENVRSM PPPPSASTRV PISSGPATIR PPDYARPQLQ FQRQQELGDY  240
AQYSQLLQGG SSSTSLLDQF ALSHLQPPTT TAATAFGSSF SGAYPQTSGN EQSEWGFHGW  300
SGDAGGGSSG REVSSKPSPP TSTWTEENQY PNSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23136199468ATERF1
3gcc_A2e-23136199468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G9GY132e-41A0A2G9GY13_9LAMI; Uncharacterized protein
TrEMBLA0A2P5Q9E12e-41A0A2P5Q9E1_GOSBA; Uncharacterized protein
STRINGGorai.003G048800.14e-41(Gossypium raimondii)
STRINGPGSC0003DMT4000163061e-40(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.13e-15ERF family protein