PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0058s0554.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 617aa    MW: 67670 Da    PI: 4.7128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0058s0554.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.6e-5391411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgk
  Kaladp0058s0554.1.p   9 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPdlSVIKTGDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGK 97 
                          699************************999.99**************96448888999******************************** PP

                  NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++sk     ++l+g+kktLvfy+grapkge+t+W+mheyr+
  Kaladp0058s0554.1.p  98 DRTIKSKktaaPSNLIGMKKTLVFYRGRAPKGERTHWIMHEYRA 141
                          ******855555555***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-616164IPR003441NAC domain
PROSITE profilePS5100558.1089164IPR003441NAC domain
PfamPF023657.9E-2810140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAVLSTDALP LGFRFRPTDE ELINHYLRLK INGRDSEVRV IPEIDVCKWE PWDLPDLSVI  60
KTGDPEWFFF CPRDRKYPNG HRSNRATEAG YWKATGKDRT IKSKKTAAPS NLIGMKKTLV  120
FYRGRAPKGE RTHWIMHEYR ATDKDLDGTG PGQGAFVLCR LFRKSDERND VPKYDEVDHT  180
GSSPATTRSS PDDTSSDIVQ EAGAPETKQP EGIRRWLTDK ADKMTDSFAG PVDSCCSNLA  240
SDSEDHAVEI KTSEDYPVVG TSPKVYESNH NLLDNNEFDS TLIPEDLPYV GSPFASDFGY  300
RYNGFQDGTG EQDIVLTELL DEVLNDLPCE ESASHKNSAI GSGSYLSDQL CVLSYRQSDT  360
YGIGNGIYGN KDVEMSQLQY DLGIGGPLWS NEPTDSESNI QILAYPGHFP ADRSFGDGVL  420
GSSIVELPES ATGVHGRSFK SEESADPKAC ANGGAKTGIK IRTRQPQRQL NSDASLQQGI  480
APRRIRLQIP STVDVLGETM KNEDQAEVVS SVSSVALATE ERASTTESEA ESDLTASEEK  540
SEVCDISREQ NSCSLRQRVK QSGQVNTPPI TWKSRRGAIA AWNGPVSLEA VIASVILLAM  600
ISLAVILGAG RWYSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-45416412165NO APICAL MERISTEM PROTEIN
1ut4_B3e-45416412165NO APICAL MERISTEM PROTEIN
1ut7_A3e-45416412165NO APICAL MERISTEM PROTEIN
1ut7_B3e-45416412165NO APICAL MERISTEM PROTEIN
3swm_A4e-45416415168NAC domain-containing protein 19
3swm_B4e-45416415168NAC domain-containing protein 19
3swm_C4e-45416415168NAC domain-containing protein 19
3swm_D4e-45416415168NAC domain-containing protein 19
3swp_A4e-45416415168NAC domain-containing protein 19
3swp_B4e-45416415168NAC domain-containing protein 19
3swp_C4e-45416415168NAC domain-containing protein 19
3swp_D4e-45416415168NAC domain-containing protein 19
4dul_A3e-45416412165NAC domain-containing protein 19
4dul_B3e-45416412165NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927949.11e-175protein NTM1-like 9
TrEMBLA0A2N9IEK61e-168A0A2N9IEK6_FAGSY; Uncharacterized protein
STRINGPOPTR_0011s15230.11e-164(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-124NAC transcription factor-like 9