PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0056s0140.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 403aa    MW: 44970.4 Da    PI: 6.6408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0056s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.2e-50201443128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrF+Ptdeel+++yL+kk+eg++ ++ evi+ev+i+++ePwdLp k+v ++++ew+fFs+r +ky++g++++rat sgyWkatgk+++
  Kaladp0056s0140.1.p  20 PGFRFSPTDEELISYYLHKKMEGSEKSV-EVIPEVEICRYEPWDLPgKSVIQSDNEWFFFSPRGRKYPNGSQSKRATGSGYWKATGKERN 108
                          9************************999.99***************777778899*********************************** PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s +++ +g+k+tLvf+ grapkg++t+W+mhey +
  Kaladp0056s0140.1.p 109 VKS-SSNFIGTKRTLVFHLGRAPKGQRTEWIMHEYCM 144
                          ***.9999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5610159IPR003441NAC domain
PROSITE profilePS5100553.53518160IPR003441NAC domain
PfamPF023659.1E-2620143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGDMSWEAQM SLVAASARFP GFRFSPTDEE LISYYLHKKM EGSEKSVEVI PEVEICRYEP  60
WDLPGKSVIQ SDNEWFFFSP RGRKYPNGSQ SKRATGSGYW KATGKERNVK SSSNFIGTKR  120
TLVFHLGRAP KGQRTEWIMH EYCMHGNSQD SLVVCRLRKN TDFRANEGSH QDSASRQRRG  180
LSMTSNNMDQ AGFADAPSHP NGHVVGDGHL VASDGERVDE GSSRKCSSSH DSYSIDQNGD  240
GLVSDRRLPH DVSQPESSSC VKDCNNDDFY AEILNDDIVQ LFDESSLTVT PSLQPFMPNM  300
FDSRTEQLPM IPATSSAAPS QGVAQRRIRF DTAKFDIDEL EMHLNPPPGP QCFVTKLSAG  360
KLRGKYVLPL LIFAALLALY LWYPVSDMKH TACACLCTDP RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-442016022168NAC domain-containing protein 19
3swm_B2e-442016022168NAC domain-containing protein 19
3swm_C2e-442016022168NAC domain-containing protein 19
3swm_D2e-442016022168NAC domain-containing protein 19
3swp_A2e-442016022168NAC domain-containing protein 19
3swp_B2e-442016022168NAC domain-containing protein 19
3swp_C2e-442016022168NAC domain-containing protein 19
3swp_D2e-442016022168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872645.11e-120NAC domain-containing protein 40-like
TrEMBLR4NEV61e-118R4NEV6_JATCU; NAC transcription factor 050
STRINGcassava4.1_032848m1e-118(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-90NTM1-like 8