PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0056s0129.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 251aa MW: 28117.4 Da PI: 4.8145

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0056s0129.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.2	8.3e-46	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l+pGfrF Pt+eelv++yL++k+e+++ +l++vi+e++iy++ePw+Lp+ +++++++w+fF++r++++a+g r+nr+t+sgyWkat Kaladp0056s0129.1.p 4 LAPGFRFFPTEEELVSFYLRNKLENQRPDLHRVIPELNIYELEPWQLPQhageLCRGDTEQWFFFAPRQHREAQGGRPNRTTASGYWKAT 93 579*************************99************645543344777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ v+s++++++g+k+t+vfy+g+ap+g+kt+W m+ey Kaladp0056s0129.1.p 94 GTPGYVYSTDNRAIGVKRTMVFYTGKAPTGTKTKWKMNEYL 134 **************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-49	3	166	IPR003441	NAC domain
PROSITE profile	PS51005	48.386	4	168	IPR003441	NAC domain
Pfam	PF02365	9.7E-24	6	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEELAPGFRF FPTEEELVSF YLRNKLENQR PDLHRVIPEL NIYELEPWQL PQHAGELCRG 60 DTEQWFFFAP RQHREAQGGR PNRTTASGYW KATGTPGYVY STDNRAIGVK RTMVFYTGKA 120 PTGTKTKWKM NEYLAIAQDD AAAAAAAACS ASVPKLRREY SVCRVYVISG NFRAFDRRPS 180 GVATSETLTG LPVENEPNLI PQNVHLVGET SRPGALAAGD DGRDNPDIDD LDMESLGQDP 240 EFSWEQIDWL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-34	4	136	17	143	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-34	4	136	17	143	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-34	4	136	17	143	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-34	4	136	17	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	4	136	20	146	NAC domain-containing protein 19
3swm_B	2e-34	4	136	20	146	NAC domain-containing protein 19
3swm_C	2e-34	4	136	20	146	NAC domain-containing protein 19
3swm_D	2e-34	4	136	20	146	NAC domain-containing protein 19
3swp_A	2e-34	4	136	20	146	NAC domain-containing protein 19
3swp_B	2e-34	4	136	20	146	NAC domain-containing protein 19
3swp_C	2e-34	4	136	20	146	NAC domain-containing protein 19
3swp_D	2e-34	4	136	20	146	NAC domain-containing protein 19
4dul_A	3e-34	4	136	17	143	NAC domain-containing protein 19
4dul_B	3e-34	4	136	17	143	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913916.1	1e-100	NAC domain-containing protein 90
Swissprot	Q9FMR3	9e-85	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2N9ISJ3	2e-97	A0A2N9ISJ3_FAGSY; Uncharacterized protein
STRING	cassava4.1_022893m	2e-93	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-83	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Kaladp0056s0129.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]