PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0056s0128.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 236aa MW: 26407.5 Da PI: 4.7066

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0056s0128.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.7	2.8e-33	4	122	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l+pGfrF Pt+eel +l++vi+e++iy++ePw+Lp+ +++++++w+fF++r++++a+g r+nr+t+sgyWkat Kaladp0056s0128.1.p 4 LAPGFRFFPTEEELR------------PDLHRVIPELNIYELEPWQLPQhageLCRGDTEQWFFFAPRQHREAQGGRPNRTTASGYWKAT 81 579********97............455678***********645543344777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ v+s++++++g+k+t+vfy+g+ap+g+kt+W ++ey Kaladp0056s0128.1.p 82 GSPGYVYSTDNRAIGVKRTMVFYTGKAPTGTKTKWKINEYL 122 **************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.945	1	153	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-41	3	151	IPR003441	NAC domain
Pfam	PF02365	5.3E-16	6	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEELAPGFRF FPTEEELRPD LHRVIPELNI YELEPWQLPQ HAGELCRGDT EQWFFFAPRQ 60 HREAQGGRPN RTTASGYWKA TGSPGYVYST DNRAIGVKRT MVFYTGKAPT GTKTKWKINE 120 YLAIAQDDAA AAACSTSVLK LRREYSVCRV YVISGNFRAF DRRPSGVATG ETLIGLPVEN 180 EPNLIPQNVH LVGETSRPGA LAAGDDGRDN PDIDDLDMES LGQDPEFSWE QIDWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	4	151	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	4	151	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	4	151	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	4	151	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	4	151	20	166	NAC domain-containing protein 19
3swm_B	1e-30	4	151	20	166	NAC domain-containing protein 19
3swm_C	1e-30	4	151	20	166	NAC domain-containing protein 19
3swm_D	1e-30	4	151	20	166	NAC domain-containing protein 19
3swp_A	1e-30	4	151	20	166	NAC domain-containing protein 19
3swp_B	1e-30	4	151	20	166	NAC domain-containing protein 19
3swp_C	1e-30	4	151	20	166	NAC domain-containing protein 19
3swp_D	1e-30	4	151	20	166	NAC domain-containing protein 19
4dul_A	1e-30	4	151	17	163	NAC domain-containing protein 19
4dul_B	1e-30	4	151	17	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913916.1	2e-88	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-73	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2N9ISJ3	2e-86	A0A2N9ISJ3_FAGSY; Uncharacterized protein
STRING	cassava4.1_022893m	9e-83	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-72	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Kaladp0056s0128.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]