PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0370.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 431aa    MW: 47151.4 Da    PI: 7.596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.2e-10104128126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC+f+++ G C +G++C++ H+
  Kaladp0055s0370.1.p 104 KKTKLCNFWSQ-GNCTFGEKCRYLHS 128
                          59*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.8872248IPR000571Zinc finger, CCCH-type
SMARTSM003560.12347IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-9102126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.436103130IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6103129IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7104128IPR000571Zinc finger, CCCH-type
SuperFamilySSF509783.07E-46125182IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.0E-45127421IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-7134173IPR001680WD40 repeat
PfamPF004003.2E-6138173IPR001680WD40 repeat
PROSITE profilePS5008215.287141182IPR001680WD40 repeat
PROSITE profilePS5029422.306141343IPR017986WD40-repeat-containing domain
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
PRINTSPR003204.1E-7160174IPR020472G-protein beta WD-40 repeat
SMARTSM003208.8213250IPR001680WD40 repeat
SuperFamilySSF509783.07E-46220424IPR017986WD40-repeat-containing domain
SMARTSM003209.1E-4257294IPR001680WD40 repeat
PfamPF004000.0046261294IPR001680WD40 repeat
PROSITE profilePS5008212.981264303IPR001680WD40 repeat
PROSITE patternPS006780281295IPR019775WD40 repeat, conserved site
PRINTSPR003204.1E-7281295IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9E-4297334IPR001680WD40 repeat
PfamPF004000.0012299333IPR001680WD40 repeat
PRINTSPR003204.1E-7321335IPR020472G-protein beta WD-40 repeat
SMARTSM003204338381IPR001680WD40 repeat
SMARTSM0032013384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDLDGGKRVF HRLGGGGSDA GDKQQKVCFH WRAGRCNRYP CPFLHRELPE PTAHSSNGGL  60
SSRRPHSFSD DSGGGFSGPR QKTHNFNSAS SWGRNNNRAA APLKKTKLCN FWSQGNCTFG  120
EKCRYLHSWS LGESFTFLTQ LDGHQKVVTA IAWPAGSDKL FTGSKDETVR IWDCQSGKCE  180
NVANLGGEIG CMISEGPWIF VGLPNFVKAL NTVTSADQTL PGPVGQVYAL VVGYDMLIAG  240
TQDGTILAWR FNTVTNCFEP AASLKGHSLA VVTLVVAANR LYSGSMDNTI RVWNLDSLQC  300
IQTLTEHTSV VMSVLCWEQF LISCSLDKTV KIWVATESGN LEVTYTHTEE HGILTLCGMT  360
DAEAKPVLLC SCNDNTVRFY DLPSFTDRGK IFSKEEIRTI QLGPVGLFFT GDGAGQVKIW  420
KWLDKPVTTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-171313844323Tako8
6g6n_A6e-171313844323Tako8
6g6n_B6e-171313844323Tako8
6g6n_C6e-171313844323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218032.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLM5X1760.0M5X176_PRUPE; Uncharacterized protein
STRINGEMJ192310.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein