PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0079.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 323aa    MW: 36092.1 Da    PI: 10.9877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.7e-19301703128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                          pGf F+Ptdee+v+++Lk+   g +   ++e+v+++vd+y    Pw++  ++++    +  fF+ ++ ++++  r +r++       +g+
  Kaladp0055s0079.1.p  30 PGFDFNPTDEEVVSYFLKRAGMGIRlpSSVESVVRRVDMYGQrAPWEIFaEEMTM--GRRVFFAITRLEKRSPGRVRRVVVsgsgrlKGT 117
                          9*******************9998855666778*****997649****7234333..344666666666667789999643355666899 PP

                  NAM  83 WkatgkdkevlskkgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                          Wk + +++++ +  g  v  k tL f          + r++k  +t+W m eyr+
  Kaladp0055s0079.1.p 118 WKGQTTKERIEV--GDMVAEKYTLSFIketddeasdQTRKKKKASTHWNMREYRV 170
                          **9999999999..889**********87777776657899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.47728192IPR003441NAC domain
SuperFamilySSF1019411.02E-1729192IPR003441NAC domain
PfamPF023654.4E-1330170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSRADDRSRM MMVAAQHQHE GEKEKRKKIP GFDFNPTDEE VVSYFLKRAG MGIRLPSSVE  60
SVVRRVDMYG QRAPWEIFAE EMTMGRRVFF AITRLEKRSP GRVRRVVVSG SGRLKGTWKG  120
QTTKERIEVG DMVAEKYTLS FIKETDDEAS DQTRKKKKAS THWNMREYRV LSYGGGEGEL  180
DQSVAFCRLT YSGPQHRSSA AASSSTWSSA AGDRKRAVEE GVESISRPAK RALVNTSKAP  240
RDGVTAAFAL ALYSKKTVGD GRAGGAAQTS TSLRMMTVVA RRAQPCPRTQ RARIPSLREE  300
GRTIPMSHVI QRVFGERART YK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.28e-10NAC domain containing protein 50