PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0053s0445.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 664aa MW: 72361 Da PI: 6.5952 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 252 | 272 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg Kaladp0053s0445.1.p 252 PCPEFRK-GTCRQGDACEYAHG 272 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 9.64E-11 | 13 | 125 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.3E-4 | 55 | 85 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 13.018 | 55 | 125 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.404 | 55 | 79 | IPR002110 | Ankyrin repeat |
Pfam | PF13637 | 3.2E-7 | 56 | 103 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.2E-10 | 56 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 97 | 90 | 122 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-4 | 244 | 274 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-5 | 247 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.784 | 252 | 274 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 252 | 272 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-4 | 280 | 310 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 21 | 282 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.972 | 282 | 306 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MEEEGLRNMS SKLLEFAACD DLVGFRKAVE EEGCDIDDAG LWYGKRMGMK KMGLEERTPL 60 MIAAMFGSVD VLRYILEKGC VDVNRMCGSD GATALGCAIA GGAASASQVI GLLIDASADV 120 NLVGAYARNL GALVSRVAPV VNVSKDFNGA ELVSDPFDQE LIGGELEGEK LIGISVIEPF 180 KDVLEKRDYP IDLSLPDIKN GIYGTDEFRM YTFKIKPCSR AYSHDWTECP FVHPGENARR 240 RDPRKHHYSC VPCPEFRKGT CRQGDACEYA HGIFECWLHP AQYRTRLCKD ETGCNRRVCF 300 FAHKPEELRP LYASTGSAIP SPRSYSASGQ LDMSSLSPLA LGSPSVLIPS SSTPPMTPTG 360 LSSPRSGSMW QNQSVAFATN SRLKSTLSGR NLEFDSADQL GTESQHRRQQ QQQLMDEMYG 420 LSSPSFWSQA YESNSSYAAG SPAARVGEFN RLMARKSSNL EDIFTSADHS VMSQLQRLSL 480 DVNQSPSGIQ MHQSVNHQQL RASNPSNLSS SPARSPSFGN SSSSAAAFLS SRSNAFAKRS 540 QSFIDRSPTN LNSGYPSPVS SPSPLHGWGS PTGKLDWGVQ GEELHKLRKS SSFGIRTNGR 600 SPAPGDLEIP WPSQSPSPSP HMKGSGPMDR LDEESHAQYH LSSGKIPTWA EQMCLDHEQT 660 VAH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682553.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1R3J6F0 | 0.0 | A0A1R3J6F0_9ROSI; Zinc finger, CCCH-type | ||||
STRING | EOY33703 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-145 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0053s0445.1.p |