PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0053s0383.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 251aa MW: 28085.3 Da PI: 10.2658 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 9 | 70 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Le+lF+ r+p+ +++ +A++l ++ ++V++WFqNr+ +e++ Kaladp0053s0383.1.p 9 STRWNPTREQLSQLESLFNGqgIRTPTPAQINSIARRLlaygPIKGKNVFYWFQNRKGRERR 70 58*****************6568*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 92 | 5.7e-30 | 8 | 71 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+Pt eQ+ Le+l++ +G+rtP+ ++i+ i+++L +yG i++kNVfyWFQNrk Rer++ Kaladp0053s0383.1.p 8 SSTRWNPTREQLSQLESLFNgQGIRTPTPAQINSIARRLLAYGPIKGKNVFYWFQNRKGRERRQ 71 689*****************9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.29E-11 | 4 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.001 | 5 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-6 | 7 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.01E-7 | 10 | 72 | No hit | No description |
Pfam | PF00046 | 3.6E-15 | 10 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-8 | 10 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDPISGRSST RWNPTREQLS QLESLFNGQG IRTPTPAQIN SIARRLLAYG PIKGKNVFYW 60 FQNRKGRERR QKRKMERQQM SANTHNNINS LNNKNNIVFN NLNNNNTENV AVSGYFNRFY 120 DRPPPSISPA LSLTTGRPHS LFQTTPLSVG NLPYYAAQPR FGFFPHCPRT DLPSHLNSPM 180 MFHPRNVISF ATQSNEVNNA EVNDALFGEG SGSRVTPATL DLFPVHPTGI LQERDDGGQS 240 DGDSNLVIID * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-18 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0053s0383.1.p |