PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0376.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 334aa    MW: 38193.1 Da    PI: 4.6661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0376.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.69e-4811301128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +p GfrF+Ptdee+v +yL++k+ + ++++ ++i e+d +k+ePwdLpk  + +++e +++++rd+ky++g r+nratk+g+Wkatgkd+
  Kaladp0053s0376.1.p   1 MPFGFRFNPTDEEVVIHYLAPKAINCEFSV-SFIGEADFNKCEPWDLPKIENMDNSERFYYCQRDRKYPNGLRTNRATKAGFWKATGKDR 89 
                          689*************************99.89***************5545566799******************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++    ++el+g++ktLvfy+grap+gekt+Wvm eyrl
  Kaladp0053s0376.1.p  90 EIYRGkipRRELIGMRKTLVFYTGRAPRGEKTNWVMYEYRL 130
                          ***988888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-531156IPR003441NAC domain
PROSITE profilePS5100550.4021155IPR003441NAC domain
PfamPF023652.6E-232130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPFGFRFNPT DEEVVIHYLA PKAINCEFSV SFIGEADFNK CEPWDLPKIE NMDNSERFYY  60
CQRDRKYPNG LRTNRATKAG FWKATGKDRE IYRGKIPRRE LIGMRKTLVF YTGRAPRGEK  120
TNWVMYEYRL MPQFFTSSMI TPQNEEWVLA RVFYKNDNLG GGATTMHSKP YNDHESTSGS  180
LWIKADQQRL VIREDFESLP PLVDHSTFLL PLPPPPTVVK PLMCPPAPAI DPRQDVDDLL  240
IYADNPVHFY PAYSATLLPP EIFGCEQPKK DHKIDESNNV AIGDAVEINK CQPEPPDYPV  300
ETSSNANQAF DDIDDEFDLP DLGSLPDLSI LWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-39115817168NO APICAL MERISTEM PROTEIN
1ut4_B5e-39115817168NO APICAL MERISTEM PROTEIN
1ut7_A5e-39115817168NO APICAL MERISTEM PROTEIN
1ut7_B5e-39115817168NO APICAL MERISTEM PROTEIN
3ulx_A5e-39115715170Stress-induced transcription factor NAC1
4dul_A5e-39115817168NAC domain-containing protein 19
4dul_B5e-39115817168NAC domain-containing protein 19
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769928.16e-68NAC domain-containing protein 87-like
SwissprotQ9SQQ62e-65NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A2U1PD194e-67A0A2U1PD19_ARTAN; No apical meristem (NAM) protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-68NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]