PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0910.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 329aa    MW: 36736.4 Da    PI: 4.5645
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1984137356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t +ql+ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Kaladp0048s0910.1.p  84 KKRRLTVDQLKFLERSFEADNKLEPDRKLQLAKDLGLQPRQVAIWFQNRRARWK 137
                          55689************************************************9 PP
2HD-ZIP_I/II1278.1e-4184174292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl+ +q+k+LE+sFe+++kLep+rK +la++Lglqprqva+WFqnrRAR+k+kq+E+dy++L+++++alk++ +rL++e+e+L+ ++
  Kaladp0048s0910.1.p  84 KKRRLTVDQLKFLERSFEADNKLEPDRKLQLAKDLGLQPRQVAIWFQNRRARWKAKQMERDYDVLQASFNALKADYDRLSQEKEDLKVQI 173
                          9**************************************************************************************887 PP

          HD-ZIP_I/II  92 k 92 
                          +
  Kaladp0048s0910.1.p 174 S 174
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-1972140IPR009057Homeodomain-like
PROSITE profilePS5007117.10379139IPR001356Homeobox domain
SMARTSM003891.1E-1882143IPR001356Homeobox domain
PfamPF000465.2E-1784137IPR001356Homeobox domain
CDDcd000863.59E-1884140No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2086146IPR009057Homeodomain-like
PRINTSPR000311.3E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5119135IPR000047Helix-turn-helix motif
PfamPF021838.1E-14139177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MASGGRVYGG SNLPPIMLQP SAAPGCPPLD SFYLSGSPPP FLLGSTSMVS FEDVNGSGNS  60
KRSLFRSFDQ EEDEYDEYFN QSGKKRRLTV DQLKFLERSF EADNKLEPDR KLQLAKDLGL  120
QPRQVAIWFQ NRRARWKAKQ MERDYDVLQA SFNALKADYD RLSQEKEDLK VQISILSDEF  180
VQKHQGTNMA EAPQALPPEN PAAASISEES KQDENSTSPK NGNKGVLDSD STSTKKREGD  240
NMFDADSHYY ISGVHSPHLE HVDSSFILEP DSSDLSQDED DSLSRGFLPS TPYRLPKLEP  300
GDYSLASSST SRNFGFPVDD NAFWSWSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021287102.11e-101homeobox-leucine zipper protein HAT5-like
TrEMBLA0A061FXY91e-100A0A061FXY9_THECC; Homeobox protein, putative isoform 1
STRINGEOY217131e-99(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-40homeobox 1