PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0733.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 335aa    MW: 37511.1 Da    PI: 7.6598
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0733.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.8e-0885109126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+ C  f   G C+ G++C+FaHg
  Kaladp0048s0733.1.p  85 FKTRVCAKFKL-GLCRNGENCNFAHG 109
                          69*********.*************9 PP
2zf-CCCH29.51.3e-09145168225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k++lC+ f+ +  C+yG+rC+F H
  Kaladp0048s0733.1.p 145 KMKLCKKFSNGEVCPYGERCNFLH 168
                          889*******66************ PP
3zf-CCCH31.53e-10227253127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+lC+ f ++G+C++Gd+C FaHg+
  Kaladp0048s0733.1.p 227 WKTKLCCKFEANGFCSFGDKCGFAHGR 253
                          8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.0E-1480117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-882115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.26784111IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-584110IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-685109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.647143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5143170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-9144169IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7145168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9224257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-14226257IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6226253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629227254IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7227253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSFPESQSPF VPPGFGSSSD AIQINSWQQY SVSNQDYNRN AQFEQPRPLK RPREEENQSD  60
NVVVVPQRMP SSTIPVNKGI TNIFFKTRVC AKFKLGLCRN GENCNFAHGV EDLRQPPPNW  120
QELVGGREED RGAGNWDDEQ RIALKMKLCK KFSNGEVCPY GERCNFLHED PKRFRDDSVR  180
FRESAAISIG TTINTVARHG SSLDQTDTNP INAGSDAYRM NVRIEHWKTK LCCKFEANGF  240
CSFGDKCGFA HGRAELQGPV AHAEGELRSA GPLTTSMNPI LDMPNDLPSR TVNNAVLNEE  300
RAGKKDFSKL KGPKKINRIY ADWIDDLPLD TPLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524459.11e-124zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-77C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLB9SEP01e-123B9SEP0_RICCO; Uncharacterized protein
STRINGXP_002524459.11e-124(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-79C3H family protein