PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0420.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 24548.5 Da PI: 10.0773 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.6e-20 | 30 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd ++ ++r++lg+f++a+ Aa+a++aa+++l+g Kaladp0048s0420.2.p 30 PKFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSADAAARAYDAAARSLRG 80 79********.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-13 | 30 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.26E-18 | 30 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 31 | 89 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.117 | 31 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGKVRGGATA AAARGNQVKD APLAIGSAEP KFRGVRKRPW GRFAAEIRDP WKKTRVWLGT 60 FDSADAAARA YDAAARSLRG PKARTNFPTP PATPPASPHH LPNDLIAAQR FYNADAYREQ 120 QRVDRANPPR PATSSMSSTV ESFSGPRRQQ TIHPAVASRR FPKSPPVTAD DCHSDCDSSS 180 DVVDGAVEVG VTTSFKKPLA FDLNFPPLDD LGFSGGESEM RCSTALCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 24 | 88 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001295747.1 | 3e-55 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 4e-41 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A0V0HV08 | 1e-62 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | PGSC0003DMT400037359 | 2e-54 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 3e-28 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0420.2.p |
Publications ? help Back to Top | |||
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