PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0325.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 376aa    MW: 40771.1 Da    PI: 4.9735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0325.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.92.3e-111472873128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykveP.wdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                          pG  F+P +ee+  +yLk  + g +    +e+++++vd+y  +  w+  ++ + ++ +  fF+ ++  + ++ r +r +   g+Wk +  
  Kaladp0048s0325.1.p 147 PGRVFNPAEEEIAGFYLKLAAMGMPlpPFAESAVRRVDVYGNQAlWEVFAE-ELGRGSRVFFAITRLVKCSKGRMSRvVGGGGTWKGQSV 235
                          8999********************964222356******987543777532.2233345666666666666778888466699******* PP

                  NAM  89 dkevlskkgelvglkktLvfy..............kgrapkgektdWvmheyrl 128
                          ++ev+   g ++ ++ +L f               +++++k  +t+W m  y++
  Kaladp0048s0325.1.p 236 KREVKI--GDVTAVRYSLSFMketndeqaaaspekTKKKKKMASTHWNMVKYKV 287
                          ****99..8899*********77777666666554367788889*****99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-13139308IPR003441NAC domain
PROSITE profilePS5100518.876145308IPR003441NAC domain
PfamPF023651.1E-6147286IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MALYVGTANG HGEADDENGD GYLHLLNFDV AAVDDNNGGL SKNTTEESIQ WSTTAQPSAT  60
ALELQEVENV DWTQISVKSN GGVIGSKDDG YLHIINFDVA AVVDNDGGLS NNATEEICCS  120
SSLQRQEEDP DQQSTITIAA TIKEWCPGRV FNPAEEEIAG FYLKLAAMGM PLPPFAESAV  180
RRVDVYGNQA LWEVFAEELG RGSRVFFAIT RLVKCSKGRM SRVVGGGGTW KGQSVKREVK  240
IGDVTAVRYS LSFMKETNDE QAAASPEKTK KKKKMASTHW NMVKYKVLSY SSEGDLDQNV  300
VFCRLTYSGP QHQSSPVPSS ASSSAVGGSK RGRREGDESI SSRPCKRVTQ EQQQDDGVTT  360
YSALNHQAGE SSRRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.23e-09NAC domain containing protein 50