PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0308.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Trihelix | ||||||||
Protein Properties | Length: 306aa MW: 33167.5 Da PI: 10.2104 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54 | 4.6e-17 | 27 | 109 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++ v L+ea++ ++ +r+klk+++W+ev++++ + ++++qCk+k+e+++kry+ ++ + s st+p++++++ Kaladp0048s0308.1.p 27 EWGERAVASLLEAYEAKWVLRNRAKLKGHDWQEVARFVsATADAPKTQTQCKNKIESMKKRYRSAAAATAG----SASTWPFYQRIH 109 5*************************************5555679*******************9999997....4779*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.4E-20 | 25 | 110 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEKATANHEL PPKPPPCGGG DKLKRDEWGE RAVASLLEAY EAKWVLRNRA KLKGHDWQEV 60 ARFVSATADA PKTQTQCKNK IESMKKRYRS AAAATAGSAS TWPFYQRIHN LLRGDNNNTG 120 GGGSSRAAPQ ISSSPLEAPS PPPFPATAQE SNGLVFKAVE QEAEDDAGAK LLLSQPDGAH 180 DKALTHPNST DSASTTPAFY RDGGKLIRPS SSNARRKRKS GVLVAESVRW LAEAVVRTEK 240 ARMETMRELE KMRIEAEMKR GELELKRTRI IADTQLQIAR LLSGSCVLVP KTADGSPPSF 300 QPGTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027342812.1 | 4e-81 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A371E9U6 | 1e-76 | A0A371E9U6_MUCPR; Trihelix transcription factor ASIL2 (Fragment) | ||||
STRING | GLYMA13G26550.1 | 2e-75 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 4e-59 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0308.1.p |