PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0197.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 357aa    MW: 39356.1 Da    PI: 8.3129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv +++ +G+g+W++++   g+ R+ k+c++rw +yl
  Kaladp0048s0197.1.p 15 KGPWTPEEDIILVSYIQDHGPGNWRLVPTNTGLQRCSKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding48.22.5e-1568113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ ++++ +++G++ W++Ia++++  Rt++++k++w+++l
  Kaladp0048s0197.1.p  68 RGNFTDQEEKMIIHLQALFGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9671062IPR017930Myb domain
SuperFamilySSF466892.73E-3012109IPR009057Homeodomain-like
SMARTSM007171.9E-131464IPR001005SANT/Myb domain
PfamPF002493.1E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-231669IPR009057Homeodomain-like
CDDcd001671.92E-111762No hitNo description
PROSITE profilePS5129424.1163117IPR017930Myb domain
SMARTSM007172.3E-1567115IPR001005SANT/Myb domain
PfamPF002491.9E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2570118IPR009057Homeodomain-like
CDDcd001679.08E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRSPGCDKV VGVKKGPWTP EEDIILVSYI QDHGPGNWRL VPTNTGLQRC SKSCRLRWTN  60
YLRPGIRRGN FTDQEEKMII HLQALFGNRW AAIASYLPQR TDNDIKNYWN THLKKKLKML  120
QPGKTNNNTN SQDDNSSSSS ASRQTHLKGQ WEKRLQTDIH MAKQALCAAL SLDKPVYETK  180
THSPPQPSNL NPLPAPTPTR TAGVTQASST PAASTYASSA ENIARLLENW SKKKSSFGSD  240
AQMTKIGQNY SLKTAKQQLV GSSSSSDEGA LSSTTPDQLD SILGNSNVTD LHQDNVMVFQ  300
EESKPLNMEL AGQALQMPLT VLEKWLLFGD GSNDITSQGQ DDLLDMFLDG NDAVFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-24151174105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-241511758159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-241511758159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-24151174105C-Myb DNA-Binding Domain
1msf_C1e-24151174105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875403.11e-121myb-related protein 306-like
SwissprotP813921e-109MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2N9J4F31e-126A0A2N9J4F3_FAGSY; Uncharacterized protein
STRINGEMJ104751e-119(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.15e-90myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]