PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0186.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 351aa MW: 39421.6 Da PI: 7.8906

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0186.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	8.9e-56	14	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++k++++++ + +i e+d++k+ePw+Lp+k+k +e+ewyfF+ rdkky+tg r+nrat++gyWkatgkdk Kaladp0048s0186.1.p 14 LPPGFRFHPTDEELITHYLCNKIADSSFAA-VAIGEADLNKCEPWHLPEKAKMGENEWYFFCLRDKKYPTGLRTNRATEAGYWKATGKDK 102 79***********************999.67***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ +++l+g+kktLvfy+grapkgek++Wvmhe+rle Kaladp0048s0186.1.p 103 EIFR-GKSLIGMKKTLVFYRGRAPKGEKSNWVMHEFRLE 140 .999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-62	6	164	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	14	164	IPR003441	NAC domain
Pfam	PF02365	1.1E-28	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MDQNMYKSDQ PIDLPPGFRF HPTDEELITH YLCNKIADSS FAAVAIGEAD LNKCEPWHLP 60 EKAKMGENEW YFFCLRDKKY PTGLRTNRAT EAGYWKATGK DKEIFRGKSL IGMKKTLVFY 120 RGRAPKGEKS NWVMHEFRLE GKLSLHNLPH TAKTEWVISR VFEKSCSGRK MHVPGVPSLS 180 SFDDFMTLNL NPQLPPLMDF SQIDTKFKPI PPPNVPCFSS QPAFHRPPQS DFVTITSSFN 240 TNNNSQLLAI SRNQPGPFAQ LGHPNPNPIF IPTSYVPGQD EAVARGYLDS INSNHGWPST 300 HLFQSGRETA AVRASQETGL TYEVNETWRP FEDGSASGVG PVDLPCVRPY *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MDQNMYKSDQ PIDLPPGFRF HPTDEELITH YLCNKIADSS FAAVAIGEAD LNKCEPWHLP  60
EKAKMGENEW YFFCLRDKKY PTGLRTNRAT EAGYWKATGK DKEIFRGKSL IGMKKTLVFY  120
RGRAPKGEKS NWVMHEFRLE GKLSLHNLPH TAKTEWVISR VFEKSCSGRK MHVPGVPSLS  180
SFDDFMTLNL NPQLPPLMDF SQIDTKFKPI PPPNVPCFSS QPAFHRPPQS DFVTITSSFN  240
TNNNSQLLAI SRNQPGPFAQ LGHPNPNPIF IPTSYVPGQD EAVARGYLDS INSNHGWPST  300
HLFQSGRETA AVRASQETGL TYEVNETWRP FEDGSASGVG PVDLPCVRPY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	12	170	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	12	170	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	12	170	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	12	170	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	12	170	18	174	NAC domain-containing protein 19
3swm_B	1e-51	12	170	18	174	NAC domain-containing protein 19
3swm_C	1e-51	12	170	18	174	NAC domain-containing protein 19
3swm_D	1e-51	12	170	18	174	NAC domain-containing protein 19
3swp_A	1e-51	12	170	18	174	NAC domain-containing protein 19
3swp_B	1e-51	12	170	18	174	NAC domain-containing protein 19
3swp_C	1e-51	12	170	18	174	NAC domain-containing protein 19
3swp_D	1e-51	12	170	18	174	NAC domain-containing protein 19
4dul_A	1e-51	12	170	15	171	NAC domain-containing protein 19
4dul_B	1e-51	12	170	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258290.1	1e-114	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-101	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A200QP08	1e-113	A0A200QP08_9MAGN; NAC domain
STRING	XP_010258290.1	1e-113	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-103	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Kaladp0048s0186.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]