PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0011.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 348aa    MW: 38802.6 Da    PI: 9.0682
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53231501128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Kaladp0048s0011.1.p  23 LPPGFRFHPTDEELITFYLLNKLADASFTG-RAIADVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATSTGYWKTTGKDK 111
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++++ + el+g+kktLvfy+grap+gek++Wvmheyr 
  Kaladp0048s0011.1.p 112 EIFNSmSAELIGMKKTLVFYRGRAPRGEKSNWVMHEYRS 150
                          ***9978889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-6315172IPR003441NAC domain
PROSITE profilePS5100560.16123172IPR003441NAC domain
PfamPF023659.0E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MERVSSGDHV QQNKEAAAAT ETLPPGFRFH PTDEELITFY LLNKLADASF TGRAIADVDL  60
NKSEPWDLPG KAKMGEKEWY FFSLRDRKYP TGVRTNRATS TGYWKTTGKD KEIFNSMSAE  120
LIGMKKTLVF YRGRAPRGEK SNWVMHEYRS HNSKATFRLA KDEWVVCRVF QKSAGIKKQY  180
STQQQSSSSR SIDPYNMDMS STTLMPPMLQ QDDTLYYPIG RASVATNYMI NNVDQLAELT  240
RALRSNAASA TAMNHLPIIP PPRQQLNNYP NNSAAGSLNL NLGRRQAAAS SGSMIAQLAD  300
VGMMMNIDSV NTAATSNYGD QHQGGGYIGL NNNMDQCMDL DSYWASY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5571781171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5571781171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5571781171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5571781171NO APICAL MERISTEM PROTEIN
4dul_A2e-5571781171NAC domain-containing protein 19
4dul_B2e-5571781171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912668.11e-127protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A0M4FKX71e-126A0A0M4FKX7_MANES; NAC transcription factors 26
TrEMBLA0A2C9W5R61e-126A0A2C9W5R6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_244.71e-126(Carica papaya)
STRINGcassava4.1_011442m1e-126(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-105NAC domain containing protein 38