PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0108.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 513aa    MW: 57006.2 Da    PI: 4.5772
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0108.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.66.7e-331475112373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea + +++el + +   +se ++p g++++R  +yf +   ++ a+           +++s   +++   a+k+f+++ P+ 
  Kaladp0047s0108.4.p 147 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETVERFSFYFFRSNDQQYAN----------LRQES---QKNFEPAFKAFYQILPLG 223
                          6899999*************************************9887776666..........34443...4567789999******** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                          +f+hl+ N+aIl a+  + e++ ++Dfd+++G+QW++ l++L      +  l +T ++ +        s+ + e+t++rL   A+++gv+
  Kaladp0047s0108.4.p 224 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapSHWNFESTQRRLICHATSVGVN 310
                          ***************9887999********************964...45699999988554477778999******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqe...adhnsesF 253
                          ++ + +   ++ dl ++e++ +   ++ la n+++ l ++   ++  +++ +e+L + k++ ++       ++++ e e     + ++++
  Kaladp0047s0108.4.p 311 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLIIAKHVTADsttggggIITLGEGEvfkRRTKDSDY 394
                          ****97...77788.67776655569**************8..55555668**********98655566669*******542244889** PP

                 GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                           + f+e l +  al+ +le ++p +  e+++++E  +++++i++    ++ +       +++  +   + G++ ++ls++   +ak l++
  Kaladp0047s0108.4.p 395 STFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIA 478
                          ***********************9877999***********98755544444......445555677899*******************9 PP

                 GRAS 343 kvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                            + s g r   ++++++vl W + pLv vS W
  Kaladp0047s0108.4.p 479 PGEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 511
                          9884455444468899***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.842120490IPR005202Transcription factor GRAS
PfamPF035142.3E-30147511IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MKRAQPLDPL LPFYYMGAAQ SGAETTFLHI NSPFAGSVIV DGESEIFSSS GDSPQAQMWC  60
YKDLEFGLLA EGKIYMEDGE LELFDGGEIS MLWDDCVGSF NPERSAVSSP YSIVNARDCS  120
VESTSPVRSS VTCLKDDMDI DDQLSLLHLL KAHAEATDRE QTELSEVIQR CISEKVNPFG  180
ETVERFSFYF FRSNDQQYAN LRQESQKNFE PAFKAFYQIL PLGRFAHLAS NSAILAAMPA  240
DTETLNVVDF DVGEGIQWAP VLETLGREKK ALSLTCIKWE GDCPTSAPSH WNFESTQRRL  300
ICHATSVGVN LKVQEVEMGD LVSEIAKSAG RRDWLAFNCQ VGLPHMARAR NHERVTEFLI  360
IAKHVTADST TGGGGIITLG EGEVFKRRTK DSDYSTFFME RLAHSQALLQ ALEWSFPDQL  420
AEAKMTMECL FMSPNISSPE WLQQWKYVKQ QGDDQADIGL EGLKLSQSSL LEAKGLIAPG  480
EHSFGVRKGG KNENEIVLEW GGTPLVRVST WI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077641.11e-129nodulation-signaling pathway 2 protein-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-13GRAS family protein