PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0039.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 315aa    MW: 33643 Da    PI: 7.1538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48.1e-191055147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd++l ++v  +G ++W+tI + ++ gR++k+c++rw + 
  Kaladp0047s0039.1.p 10 KGPWSPEEDDKLRELVVVHGARNWSTICKSIP-GRSGKSCRLRWCNQ 55
                         79******************************.***********985 PP
2Myb_DNA-binding53.94.2e-1764106347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eEde+++ a +++G++ W++Iar+++ gRt++++k++w++ 
  Kaladp0047s0039.1.p  64 PFTAEEDEIIIGAQARYGNR-WAAIARMLN-GRTDNSIKNHWNST 106
                          89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.112160IPR017930Myb domain
SuperFamilySSF466897.11E-317103IPR009057Homeodomain-like
SMARTSM007171.3E-15958IPR001005SANT/Myb domain
PfamPF002496.8E-181055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-261163IPR009057Homeodomain-like
CDDcd001674.64E-151254No hitNo description
SMARTSM007174.4E-1561109IPR001005SANT/Myb domain
PROSITE profilePS5129419.27362111IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2264110IPR009057Homeodomain-like
CDDcd001671.11E-1264107No hitNo description
PfamPF002491.1E-1464106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEQKELGRIK GPWSPEEDDK LRELVVVHGA RNWSTICKSI PGRSGKSCRL RWCNQLSPEV  60
EHRPFTAEED EIIIGAQARY GNRWAAIARM LNGRTDNSIK NHWNSTLKRK FSAMAAESNG  120
AVLECNNRPL KRADSVGAAV GTGLALSPGS PSGSDVCDST HPVTQTSPVG PVFLPVTRTT  180
SAPQALMLID PVTDLTLSLP GAEAAARPTT PPAPPPNPSR ASVGSDNPVK EIGSMSFGPQ  240
LLTVMQEIIK EEVKKVMSNL VIDQNKVIVH TGSVHENGVV VGVSDGAGDD DNEVRCIGIS  300
KVDHQRQPNG GSRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-3691103104C-Myb DNA-Binding Domain
1msf_C2e-3691103104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315871.11e-93transcription factor MYB44-like
SwissprotO231602e-75MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A498JY661e-92A0A498JY66_MALDO; Uncharacterized protein
STRINGXP_008373085.14e-94(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-67myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]