PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0046s0292.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 753aa    MW: 81413.4 Da    PI: 7.5465
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0046s0292.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06297318426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C++f++ G C  Gd+C+F+H+
  Kaladp0046s0292.2.p 297 KVCQHFLK-GRCLKGDKCTFSHD 318
                          68******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161313.3E-7242318IPR032297Torus domain
PROSITE profilePS5010316.042293320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7293318IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4295319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5297319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.756322346IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012322348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99347375IPR000571Zinc finger, CCCH-type
SMARTSM003560.95350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4352373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MHFSMDDIEN FLMDIDGIQE PVPVNVSINQ KALQLVPGAL LEKEAVEQHL PESSQHENGF  60
LNIVEFDEAA QRASGSDKCV PSQKEQINQN QLLDEPNIQS GSTNSQTNVH MTNGCDDIEE  120
GEIDDIHAQE KSSVSRENNV DSLQHSEAGA DYQHSVEHKL CVSDFSRSTS VRIVDNCPIQ  180
NDSKIERDFQ AISDACANFD TVKTVDIPIV NSAETHASLC ANDSRKPVFY GDISEEASQN  240
AQGTLQMGVN IFKEKKRGGS SKEKRKLQKR KKRKEIDKKL GVKRMKLPPA LMPKAVKVCQ  300
HFLKGRCLKG DKCTFSHDAT PLTKSEACVH FARNNCLKGD ACPYDHQLGK YPCNNYASQG  360
FCNRGNGCLF SHEIPAEEGS QGASTAEKLD LKSPSVPETS SKIHANSAAS ISIKPPVQVP  420
KGLSFLSLGK SGSDSFSRRK PSSSSQIADM IGLSNHSRHN VPGTAKILKG TSKPILAPVT  480
SNNDSFLDTQ LDHSVGNKNS VFKACSKSLI DSTSSLDRGL LGLHSLVSSK VPLNCVNNEL  540
LETSAKEHTP PVSHFSRLGM HSGSSMGNEM SVLKVDIHKE QTSISKSQIT DNMHVEAIQA  600
EAPTRVHCFS SDKSLEIKPN QTLAASISKD HESGKKVSIQ NQRTHGIPRH SCAEELNTIV  660
STIPSSCSQG LAENKSMLCS VPKALIPALS FASKIECETK VPSLGSVGNS QFKKEPESGI  720
SSSRGRGSFN SGPVKASAVL DFIFGTGGKT QK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254273KKRGGSSKEKRKLQKRKKRK
2264279RKLQKRKKRKEIDKKL
3269274RKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-06C3H family protein