PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0046s0292.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 844aa    MW: 91282.2 Da    PI: 6.9098
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0046s0292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06388409426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C++f++ G C  Gd+C+F+H+
  Kaladp0046s0292.1.p 388 KVCQHFLK-GRCLKGDKCTFSHD 409
                          68******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF161314.2E-7334409IPR032297Torus domain
PROSITE profilePS5010316.042384411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7384409IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4386410IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5388410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.756413437IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012413439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99438466IPR000571Zinc finger, CCCH-type
SMARTSM003560.95441465IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAEEHGAALL NLTCLRGESR LKSETLRGVI HILSRCYELP KETCRGDDSG PGGDHKNSLH  60
LNEPDPATAI NLDAAEDIIS THDSQHGDDQ QMHFSMDDIE NFLMDIDGIQ EPVPVNVSIN  120
QKALQLVPGA LLEKEAVEQH LPESSQHENG FLNIVEFDEA AQRASGSDKC VPSQKEQINQ  180
NQLLDEPNIQ SGSTNSQTNV HMTNGCDDIE EGEIDDIHAQ EKSSVSRENN VDSLQHSEAG  240
ADYQHSVEHK LCVSDFSRST SVRIVDNCPI QNDSKIERDF QAISDACANF DTVKTVDIPI  300
VNSAETHASL CANDSRKPVF YGDISEEASQ NAQGTLQMGV NIFKEKKRGG SSKEKRKLQK  360
RKKRKEIDKK LGVKRMKLPP ALMPKAVKVC QHFLKGRCLK GDKCTFSHDA TPLTKSEACV  420
HFARNNCLKG DACPYDHQLG KYPCNNYASQ GFCNRGNGCL FSHEIPAEEG SQGASTAEKL  480
DLKSPSVPET SSKIHANSAA SISIKPPVQV PKGLSFLSLG KSGSDSFSRR KPSSSSQIAD  540
MIGLSNHSRH NVPGTAKILK GTSKPILAPV TSNNDSFLDT QLDHSVGNKN SVFKACSKSL  600
IDSTSSLDRG LLGLHSLVSS KVPLNCVNNE LLETSAKEHT PPVSHFSRLG MHSGSSMGNE  660
MSVLKVDIHK EQTSISKSQI TDNMHVEAIQ AEAPTRVHCF SSDKSLEIKP NQTLAASISK  720
DHESGKKVSI QNQRTHGIPR HSCAEELNTI VSTIPSSCSQ GLAENKSMLC SVPKALIPAL  780
SFASKIECET KVPSLGSVGN SQFKKEPESG ISSSRGRGSF NSGPVKASAV LDFIFGTGGK  840
TQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345364KKRGGSSKEKRKLQKRKKRK
2355370RKLQKRKKRKEIDKKL
3360365RKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-06C3H family protein