PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0046s0120.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 320aa    MW: 35770.9 Da    PI: 5.4662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0046s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ed++l + ++ +G ++W++ +r  g+ R++k+c++rw +yl
  Kaladp0046s0120.1.p 16 KGPWTSDEDQILTNHINFHGHPNWRALPRLAGLARCGKSCRLRWTNYL 63
                         79********************************************97 PP
2Myb_DNA-binding491.4e-1569114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e +++ +++lG++ W++Ia++++ gRt++++k+ w+++l
  Kaladp0046s0120.1.p  69 RGNFTREEEETIINSHELLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8211163IPR017930Myb domain
SuperFamilySSF466896.6E-2813110IPR009057Homeodomain-like
SMARTSM007172.3E-101565IPR001005SANT/Myb domain
PfamPF002491.9E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-211770IPR009057Homeodomain-like
CDDcd001671.29E-91863No hitNo description
PROSITE profilePS5129422.79464118IPR017930Myb domain
SMARTSM007178.4E-1468116IPR001005SANT/Myb domain
PfamPF002496.9E-1469114IPR001005SANT/Myb domain
CDDcd001676.00E-1171114No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2571118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVRSPSSTEQ TAGLKKGPWT SDEDQILTNH INFHGHPNWR ALPRLAGLAR CGKSCRLRWT  60
NYLQPGIKRG NFTREEEETI INSHELLGNR WSAIAAKLPG RTDNEIKNVW HTHLKKRLLN  120
NNQNQPQGST ASIGGSHNNR SDDVIIIDES LFHQARDDHS NTNPLVQHAH ADRDDQNPND  180
APACNTHSHT IHVPSISPQD SYGKASYNNC EQVPSPEAFP ETDESFWSDV LSSDYDYRSG  240
SSSMKSYYTP CHQQPFLPVS DNSVVNMEMD YPQEAAGSSF PDVPANNVNN NNNAVQDGDD  300
VDDFWFDVLF RAGEHPILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141185108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.14e-62myb domain protein 13