PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0236.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 380aa    MW: 41228.6 Da    PI: 6.6044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0236.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13319364655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Kaladp0045s0236.2.p 319 SIAERVRRTKISERMRRLQELVPNM----DKQTNTSDMLDMAVDYIKDLQ 364
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16316376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12317368No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15318374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDADLHQARQ FNPVVVGGGG GGSGGLTRYR SAPSSYFSNF GMEYKDVSDF LRPPPPKPLS  60
PQIDRIFAQL ASEIPGDHTL EVEAAITTPV MKLEIEPELP PAAPVMMASY TPSAGLPPPH  120
PLSRTSSGVN TSSHRGLKSS AAQPVRIPVV EKPSSGSNIA RHNSLPAGLF SQIDVHNVAA  180
AYFCTGSNQA NSSSDLMSAY SGIGNDNIKP EEDDDYMLNG FWNDSPSTEK LLTGVKRERA  240
EDEFLSGGAL EDIKPFSKDS NIPAAGEMKK SGLLSHHLSL PKSSMEMLSA MEKFLDLQDS  300
TTVPVGVRAK RGCATHPRSI AERVRRTKIS ERMRRLQELV PNMDKQTNTS DMLDMAVDYI  360
KDLQQRVQIL QACRERCTC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-45bHLH family protein