PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0044s0082.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 251aa    MW: 28130 Da    PI: 4.9507
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0044s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.4e-3154111359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d ++++itY+++Hnh+
  Kaladp0044s0082.1.p  54 DSWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSRTDASMLIITYTSTHNHP 111
                          99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3145113IPR003657WRKY domain
SuperFamilySSF1182903.4E-2650113IPR003657WRKY domain
SMARTSM007746.1E-3652112IPR003657WRKY domain
PROSITE profilePS5081131.4154113IPR003657WRKY domain
PfamPF031065.2E-2654111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEGSLISDQQ TQTRHHPNPE TQAAKRDKSV HKTVVTVKVV AGCGKQKNEG PPGDSWSWRK  60
YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERSRTDASML IITYTSTHNH PGPNLPGSTN  120
LTSQNQETQE LSTGEIVAEP KLEQPEVEDE LGENNIEREE DHFHYIEPPQ DVTNHNDGNP  180
FSVVLDSTHE SLGVLFDEEP ISYPPIRTSP KPESDEYDFF DELEELPMSL PFTSFMKSSF  240
CHDRILVQPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22531131779Disease resistance protein RRS1
5w3x_D1e-22531131779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270750.32e-88PREDICTED: probable WRKY transcription factor 65
TrEMBLD7U2J04e-87D7U2J0_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01520.t016e-88(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-35WRKY family protein